View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_high_22 (Length: 220)
Name: NF15988_high_22
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 47294570 - 47294759
Alignment:
| Q |
15 |
aagaacttgtatggagttattaaatcgataaaaggtaaagccaatcaagtttgtgattgactagtaattactagcttataatattctatnnnnnnngaca |
114 |
Q |
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| T |
47294570 |
aagaacttgtatggagttattaaatcgataaaaggtaaagccaatcaagtttgtgattgactagtaattactagcttataatattctataaaaaaagaca |
47294669 |
T |
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| Q |
115 |
ttttgttattaattgagcataatagccaatataccaaattgaaattcccaaatagagtggtgaacctttcagtgacttggtagatgttgg |
204 |
Q |
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| T |
47294670 |
ttttgttattaattgagcataatagccaatataccaaattgaaattcccaaatagagtggtgaacctgtcagtgacttggtagatgttgg |
47294759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 56044694 - 56044767
Alignment:
| Q |
15 |
aagaacttgtatggagttattaaatcgataaaaggtaaagccaatcaagtttgtgattgactagtaattactag |
88 |
Q |
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| T |
56044694 |
aagaacttgtatggagtagttaaatcaataaaagataacgccaatgaagtttgtgattgattagtaattactag |
56044767 |
T |
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