View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_high_3 (Length: 450)
Name: NF15988_high_3
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 43063556 - 43063992
Alignment:
| Q |
1 |
aatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatcgtac |
100 |
Q |
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| T |
43063556 |
aatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatcgtac |
43063655 |
T |
|
| Q |
101 |
atcttgtttgacagagttcatttctttaagaagacctgaaaactgaaaatggctgcctttggtaaatcgttctttgagattatcccagtgttttggcatt |
200 |
Q |
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| T |
43063656 |
atcttgtttgaaagagttcatttctttaagaagacctgaaaactgaaaatggttgcctttggtaaatcgttctttgagattatcccagtgttttggcatt |
43063755 |
T |
|
| Q |
201 |
gtcgatttagtcaaccctagaagcaatttgaggtggaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaacttaaca |
300 |
Q |
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| T |
43063756 |
gtcgatttagtcaaccctagaagcaatttgagatggaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaacttaaca |
43063855 |
T |
|
| Q |
301 |
tcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatatagag-aaattatgaaca |
399 |
Q |
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| T |
43063856 |
tcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgatgcgcttaataccatatagagaaaattatgaaca |
43063955 |
T |
|
| Q |
400 |
aaatgatttttgctcattgattgtaaatgatctattt |
436 |
Q |
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| T |
43063956 |
aaatgatttttgctcattgattgtaaatgatctattt |
43063992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 190 - 433
Target Start/End: Complemental strand, 43182590 - 43182332
Alignment:
| Q |
190 |
gttttggcattgtcgatttagtcaaccctagaagcaatttgaggtg---gaagacagcgattaatccaagataccaccaagctgttacattgttcccaag |
286 |
Q |
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| T |
43182590 |
gttttggcattgtcggtttagtcagcgctagaagaaatttgaggtgaaagaagacagcaagtaatccaatatacaaacatgctgttacatcgttcccata |
43182491 |
T |
|
| Q |
287 |
aatcgaacttaacatcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaa----gcataaaatgatgcgc-------ttaa |
375 |
Q |
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| T |
43182490 |
aatcgaacttaacatcatcttagttacatggttgaaggatttgattaacaaaaaggcttgaatgtggaagcatgcataaaatgatgcgcctaatggctaa |
43182391 |
T |
|
| Q |
376 |
taccatatagag-aaattatgaacaaaatgatttttgctcattgattgtaaatgatcta |
433 |
Q |
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| T |
43182390 |
taccatatagagaaaatgatgaatagaatgaattgagttcattgattgtaaatgatcta |
43182332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 170 - 384
Target Start/End: Complemental strand, 43180409 - 43180194
Alignment:
| Q |
170 |
ttctttgagattatcccagtg--ttttggcattgtcgatttagtcaaccctagaagcaatttgaggtggaagacagcgattaatccaagataccaccaag |
267 |
Q |
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||||||||||||||| ||| | ||||||| || |||||| ||| ||| ||||||| ||||||||| | ||||| ||||||||| |||||| |||| | | |
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| T |
43180409 |
ttctttgagattatcacagagggttttggctttctcgatt-agtgaacgctagaagaaatttgaggcgaaagactgcgattaattcaagatgccactatg |
43180311 |
T |
|
| Q |
268 |
ctgttacattgttcccaagaatcgaacttaacatcatcttagttccatggtggaaggatttgattaacaaaaaggcatgaatgtggaagcataaaatgat |
367 |
Q |
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| T |
43180310 |
ccattacatcgttctcaagaattgaacttaacatcatcttagctccatggtggaaggatttgattaacagaaaggcatgaatgcagaagtgtgaaatgat |
43180211 |
T |
|
| Q |
368 |
gcgcttaataccatata |
384 |
Q |
| |
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|||| ||||||||||| |
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| T |
43180210 |
gcgccgaataccatata |
43180194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 43182707 - 43182592
Alignment:
| Q |
1 |
aatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatcgtac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| | ||||||||| ||||||| ||||||||||||||| || | |
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| T |
43182707 |
aatatttcacagaacacatacaatctttaatacggcataaagcctctaattcgtcccatacggttttcaacaaagtgaagagattagttacatattgttc |
43182608 |
T |
|
| Q |
101 |
atcttgtttgacagag |
116 |
Q |
| |
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| ||||||||| |||| |
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| T |
43182607 |
accttgtttgaaagag |
43182592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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