View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_high_4 (Length: 421)
Name: NF15988_high_4
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 21 - 413
Target Start/End: Complemental strand, 54395638 - 54395248
Alignment:
| Q |
21 |
tcaaataaaccatatcaaacatatagagatttcttttggtttcaaaaacccaatgtattagcaaaattaaaacaaatatctaaagataacataatatgta |
120 |
Q |
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| T |
54395638 |
tcaaataaaccatatcaaacatatagagatttcttttggtttcaaaaacccaatgtattagcaaaattaaaacaaat--ctaaagataacatacaatgta |
54395541 |
T |
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| Q |
121 |
ttgagctaagagtactgagcatcaatagttcaataaagcagctacaccaatgagtgccgtggcattaaccttagcacactacaaagaagtatacctatcc |
220 |
Q |
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| T |
54395540 |
ttgagctaagagtactgagcatcaatggttcaataaagcagctacaccaatgagtgccgtggcattaaccttagcacactacaaagaagtatacctatcc |
54395441 |
T |
|
| Q |
221 |
atcactcaatcaagatgattctcactaatttcaatgttacatatgccaccattgcgcacatacaaaatcagttcaaaattctacaacgcacgactaacct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395440 |
atcactcaatcaagatgattctcactaatttcaatgttacatatgccaccattgcgcacatacaaaatcagttcaaaattctacaacgcacgactaacct |
54395341 |
T |
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| Q |
321 |
catatatgtgctttaatcagttatgtagcttctctatgctttccaacaacatctctgcatccactactaaactctctgattctaccctatgct |
413 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54395340 |
catatatgtgcattaatcagttatgtagcttctctatgctttccaacaacatctctgcatccactactaaactctctgattctaccctttgct |
54395248 |
T |
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