View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_low_11 (Length: 325)
Name: NF15988_low_11
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 269670 - 269354
Alignment:
| Q |
1 |
aaaccacaataatgtgatgctatgtatgcataagaaaatcttcatttaattgaattaaatcagaaatctagtttccatttggttagcatttttaattcta |
100 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
269670 |
aaacctcaataatgtgatggtatgtatgcataagaaaatcttcatttagttgaattaaatcagaaatctagtttccatttggttagcatttttaattcta |
269571 |
T |
|
| Q |
101 |
tttctcaaatctttaacgatttgtgaaccatctggtgtaacatcctttaggagtacctatatcttgcttgcttatgtggttccaattttctctcaaatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
269570 |
tttctcaaatctttaacgatttgtgaaccatctggtgtaacatcctttaggagtacctatatcttgcttgcttatttggttccaattatctctcaaatat |
269471 |
T |
|
| Q |
201 |
ccatctctcagcttaacattaaggtgattatcttattccgacattcccctacaccatatgcaatctaactccttaac--atcccgaataactctactctt |
298 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
269470 |
ccatctctcagcttaacattaaagtgattatcttattccgacattcccctacaccatatgcaatctaactccttaacatatcacgaataactctactctt |
269371 |
T |
|
| Q |
299 |
ggaaaggttcacctttg |
315 |
Q |
| |
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||||||||||||||||| |
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| T |
269370 |
ggaaaggttcacctttg |
269354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 312
Target Start/End: Complemental strand, 29274438 - 29274350
Alignment:
| Q |
224 |
gtgattatcttattccgacattcccctacaccatatgcaatctaactccttaacatcccgaataactctactcttggaaaggttcacct |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
29274438 |
gtgagtatcttattccgacattcccctacaccatatgcaatctaactccttaacatcacgaataactctactcttgaaaaggttcacct |
29274350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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