View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_low_14 (Length: 304)
Name: NF15988_low_14
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 47 - 287
Target Start/End: Original strand, 40207676 - 40207916
Alignment:
| Q |
47 |
tttgtgcagatttgatagagatcttaagtggagaactggtgttgagattgttccaatacattgctcaagctccaacaactttcaagtaaccgaacaagca |
146 |
Q |
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| T |
40207676 |
tttgtgcagatttgatagagatcttaagtggagaactggtgttgagattgttccaatacattgcacaagctccaacaactttcaagtaaccgaacaagca |
40207775 |
T |
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| Q |
147 |
ttgcaacaagcataccaagaggcacaaaaacgcaaccttaaagtcaaaggagtaatggttacaaacccatcaaacccgctaggcaccacaatgtcaagga |
246 |
Q |
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| T |
40207776 |
ttgcaacaagcataccaagaggcacaaaaacgcaaccttaaagtcaaaggagtaatggttacaaacccatcaaacccgctaggcaccacaatgtcaagga |
40207875 |
T |
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| Q |
247 |
gtgaattaaatcttctcgttgactttatcaaagaaaacaaa |
287 |
Q |
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| T |
40207876 |
gtgaattaaaccttctcgttgactttatcaaagaaaacaaa |
40207916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 287
Target Start/End: Complemental strand, 5134863 - 5134627
Alignment:
| Q |
51 |
tgcagatttgatagagatcttaagtggagaactggtgttgagattgttccaatacattgctcaagctccaacaactttcaagtaaccgaacaagcattgc |
150 |
Q |
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| T |
5134863 |
tgcagatttgatagagacttaaaatggagaactggggtcgagatagtgccaatacaatgcacaagcacaaataacttccaaatcacagaatcggctttgc |
5134764 |
T |
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| Q |
151 |
aacaagcataccaagaggcacaaaaacgcaaccttaaagtcaaaggagtaatggttacaaacccatcaaacccgctaggcaccacaatgtcaaggagtga |
250 |
Q |
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| T |
5134763 |
aacaagcttatgaagaagcaaagaacaagaaccttaaagtcaaaggtgtcttagtcacaaatccatcaaacccactaggcactacaatgtcaaagagtga |
5134664 |
T |
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| Q |
251 |
attaaatcttctcgttgactttatcaaagaaaacaaa |
287 |
Q |
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| T |
5134663 |
attaaaccttctcattgacttcatcaaagacaacaaa |
5134627 |
T |
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