View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15988_low_19 (Length: 249)

Name: NF15988_low_19
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15988_low_19
NF15988_low_19
[»] chr3 (2 HSPs)
chr3 (15-233)||(40147488-40147706)
chr3 (17-208)||(8102258-8102449)
[»] chr4 (5 HSPs)
chr4 (19-159)||(7656264-7656404)
chr4 (23-167)||(7636908-7637052)
chr4 (25-161)||(7606086-7606222)
chr4 (19-163)||(7615098-7615242)
chr4 (63-167)||(7628532-7628636)
[»] chr7 (3 HSPs)
chr7 (19-167)||(8913716-8913864)
chr7 (34-145)||(8941878-8941989)
chr7 (58-163)||(8936258-8936363)
[»] chr6 (2 HSPs)
chr6 (17-167)||(6500343-6500493)
chr6 (78-131)||(11968807-11968860)
[»] chr8 (1 HSPs)
chr8 (51-152)||(15196319-15196420)
[»] scaffold0190 (1 HSPs)
scaffold0190 (78-167)||(4300-4389)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 40147488 - 40147706
Alignment:
Q  15 agaacctgtggcagtttgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcct 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147488 agaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcct 40147587  T
Q  115 cacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtctaattagtgtgagtttaaggtttgcaaaatcagtttggtaccacgct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147588 cacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtctaattagtgtgagtttaaggtttgcaaaatcagtttggtaccacgct 40147687  T
Q  215 atttcatgctatgttgatg 233  Q
    |||||||||||||||||||    
T  40147688 atttcatgctatgttgatg 40147706  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 8102449 - 8102258
Alignment:
Q  17 aacctgtggcagtttgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctca 116  Q
    |||| ||||||||| ||||||||||||||  ||||||| || || ||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||    
T  8102449 aaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctca 8102350  T
Q  117 caagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtctaattagtgtgagtttaaggtttgcaaaatcagtttggtac 208  Q
    ||||||||||||||||||||||||||| | ||  |||||| |  |||| || |||||  ||| ||||||  ||||||||||  |||||||||    
T  8102349 caagattttggaggcaatgggaaatgatcctgttttcatgaactttgtatccaattaacgtgggtttaaaatttgcaaaattggtttggtac 8102258  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 7656264 - 7656404
Alignment:
Q  19 cctgtggcagtttgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcaca 118  Q
    |||||||||||| | ||||||||||||| || ||||||| ||  ||  |||||||||| |||||||| |||||| ||| ||||||||||||||||| |||    
T  7656264 cctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttaca 7656363  T
Q  119 agattttggaggcaatgggaaatgaccatgacttcatggat 159  Q
    ||||||||||||||||||||||||| | ||| |||||||||    
T  7656364 agattttggaggcaatgggaaatgatcctgagttcatggat 7656404  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 7637052 - 7636908
Alignment:
Q  23 tggcagtttgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagat 122  Q
    |||||||| | |||||| ||||||||| |||| | ||||| |||||||| |||| |||||||||||| || ||| ||||||| ||||||||||   ||||    
T  7637052 tggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagat 7636953  T
Q  123 tttggaggcaatgggaaatgaccatgacttcatggatgttgtgtc 167  Q
    |||||||| ||||||||||||||   | |||||||||||||||||    
T  7636952 tttggagggaatgggaaatgaccccaatttcatggatgttgtgtc 7636908  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 7606222 - 7606086
Alignment:
Q  25 gcagtttgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattt 124  Q
    |||||| | |||||| ||||||||| ||||||  | | |||||||||||||| |||||||||||| || ||| ||||||| ||||||||| ||||| |||    
T  7606222 gcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttt 7606123  T
Q  125 tggaggcaatgggaaatgaccatgacttcatggatgt 161  Q
    ||||||||||||||| |||||   | |||||||||||    
T  7606122 tggaggcaatgggaagtgacccacatttcatggatgt 7606086  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 7615242 - 7615098
Alignment:
Q  19 cctgtggcagtttgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcaca 118  Q
    |||||||||||| | |||||| |||||  || |||| | ||||| || |||||||||| |||||||||||| || ||  ||||||| |||||| | ||      
T  7615242 cctgtggcagttcgtagtggatataaaggaaatggacttattacggtttttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatg 7615143  T
Q  119 agattttggaggcaatgggaaatgaccatgacttcatggatgttg 163  Q
    ||||||||||||||||||||||||||| | | |||||||||||||    
T  7615142 agattttggaggcaatgggaaatgaccctcaattcatggatgttg 7615098  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 7628636 - 7628532
Alignment:
Q  63 tgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgtt 162  Q
    |||||||||||||| |||||||||||| || ||| ||||| | ||||||||| || ||||||||||||||||||||||||||| | | ||  ||||||||    
T  7628636 tgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgtt 7628537  T
Q  163 gtgtc 167  Q
    |||||    
T  7628536 gtgtc 7628532  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 8913716 - 8913864
Alignment:
Q  19 cctgtggcagtttgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcaca 118  Q
    |||||||||||| | |||||| ||||||||| |||| | ||||| |||||||  |||| |||||||||||  || ||| ||||||| ||||||||||       
T  8913716 cctgtggcagttcgtagtggatataaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtg 8913815  T
Q  119 agattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtc 167  Q
    |||||||||||| ||||||||||||||   | |||||||||||||||||    
T  8913816 agattttggagggaatgggaaatgaccccaatttcatggatgttgtgtc 8913864  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 8941878 - 8941989
Alignment:
Q  34 agtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaa 133  Q
    |||||| ||||||||| ||||||  | | |||||||||||||| |||||||||||| || ||| ||||||| ||||||||| || || ||||||||||||    
T  8941878 agtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaa 8941977  T
Q  134 tgggaaatgacc 145  Q
    |||||| |||||    
T  8941978 tgggaagtgacc 8941989  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 8936258 - 8936363
Alignment:
Q  58 attactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatgg 157  Q
    ||||| |||||||| |||| |||||||||||| || ||| ||||||| ||||||||  |  ||||||||||||||||||||||||||| | | |||||||    
T  8936258 attacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccctcaattcatgg 8936357  T
Q  158 atgttg 163  Q
    ||||||    
T  8936358 atgttg 8936363  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 6500493 - 6500343
Alignment:
Q  17 aacctgtggcagtttgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctca 116  Q
    |||| |||||| || |||||| ||||||||||  ||| ||| ||| ||||||||||||||||||| ||||||| || ||| ||||||| ||||||||| |    
T  6500493 aacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttgctggaaaagaataaggtagtatagaccttcaagtttgtcttcctta 6500394  T
Q  117 caagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtc 167  Q
    ||||| |||||| |||||| |  |||||| | | |||||||||| ||||||    
T  6500393 caagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtc 6500343  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 11968860 - 11968807
Alignment:
Q  78 agaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggc 131  Q
    |||||||||||| || |||||| |||||||||||||| ||||||||||||||||    
T  11968860 agaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggc 11968807  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 15196319 - 15196420
Alignment:
Q  51 tggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgac 150  Q
    ||||| ||||| ||| |||||||| ||||||||||| || ||||||||| |||||||||||||  |||||||||||||||  ||||||||||||| ||||    
T  15196319 tggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccctgac 15196418  T
Q  151 tt 152  Q
    ||    
T  15196419 tt 15196420  T

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Target: scaffold0190 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 4389 - 4300
Alignment:
Q  78 agaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtc 167  Q
    |||||| |||||||||||| || |||| |||||||||    | ||||||||||||||  ||||||| | ||| || ||||||||||||||    
T  4389 agaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctgagtttatggatgttgtgtc 4300  T

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