View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_low_2 (Length: 613)
Name: NF15988_low_2
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 43300851 - 43300617
Alignment:
| Q |
1 |
aacaaatatgcagaaatggttacggtgggacttagggtagagtattcaattctcattggacaggcccagagtaatgagctgggcttcactccctactatt |
100 |
Q |
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| T |
43300851 |
aacaaatatgcagaaatggttacggtgggacttagggtagagtattcaattctcattggacaggcccaaagtaatcagctgggcttcactccctactatt |
43300752 |
T |
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| Q |
101 |
ttattgaaatttctccccccacctcccccacacctaaaaaataggaaagagtcgtaagatgaaatgctacttttcatttccttttatttttaacagctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||||| | |
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| T |
43300751 |
ttattgaaatttctccccccacctcccccacaccaaaaaaataggaaagagtcgtaatataaaatgctaattttcatttcattttatttttaacagctca |
43300652 |
T |
|
| Q |
201 |
accaatgcacctaacattacttcctgcttcaaaga |
235 |
Q |
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| T |
43300651 |
accaatgcacctaacattacttcatgcttcaaaga |
43300617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 400 - 613
Target Start/End: Complemental strand, 43300341 - 43300128
Alignment:
| Q |
400 |
ttttgtagattccaataacaagaacaacttttgttgcgtcagcaccttttaaatccaacatacttacttctccatattgctcaagaaactgaaatccgag |
499 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43300341 |
ttttgtagattccaataacaagaacaacttttgttgcatcagcaccttttaaatccaacatacttacttctccatattgctcaagaaactgaaatccgag |
43300242 |
T |
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| Q |
500 |
agacatgcaagacaaaagtgagactactaaatttaaaatagcctacaccagtaaaatcagaattacacaacaaaaatgcatcccaaaaacatagaaaatg |
599 |
Q |
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| T |
43300241 |
agacatgcaagacaaaagtgagactactaaatttaaaatagcctacaccagtaaaatgagaatgacacaacaaaaatgcatcctaaaaacatagaaaatg |
43300142 |
T |
|
| Q |
600 |
taaaggtaccatac |
613 |
Q |
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|||||||||||||| |
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| T |
43300141 |
taaaggtaccatac |
43300128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 232 - 402
Target Start/End: Complemental strand, 43300555 - 43300385
Alignment:
| Q |
232 |
aagacattaaccatggaaactagtctgttttcacgatgaaaatttgcagtgtaaaatggatttatttgtttagcatacgctagtgtatataaattataaa |
331 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43300555 |
aagacattaaccatgaaaactagtctgttttcacgatgaaaatttgcagtgtaaaatggatttatttgtttagcatacgctagtgtatataaattataaa |
43300456 |
T |
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| Q |
332 |
ttatgatgatacactatcgacaaaagtttagtcaagcnnnnnnnnttatacccatattataccactcattt |
402 |
Q |
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| T |
43300455 |
ttatgatgatacactatcgacaaaagtttactcaagtaaaaaaaattatacccatattatagcactcattt |
43300385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 408 - 605
Target Start/End: Complemental strand, 27647287 - 27647088
Alignment:
| Q |
408 |
attccaataacaagaacaacttttgttgcgtcagcaccttttaaatccaacatacttacttctccatattgctcaagaaactgaaatccgagagacatgc |
507 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||| |
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| T |
27647287 |
attccaataacaagaacaacttttgttgcatcagcaccttttaaatccaacatactcacttctccatattgctcaagaaactgaaatccaagatatatgc |
27647188 |
T |
|
| Q |
508 |
aagacaaaagtgagactac--taaatttaaaatagcctacaccagtaaaatcagaattacacaacaaaaatgcatcccaaaaacatagaaaatgtaaagg |
605 |
Q |
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||||||||||||||| ||| ||||| ||||||||||| || |||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
27647187 |
aagacaaaagtgagaatactataaatctaaaatagcctctactagtaaaatgagaattacataacaaaaaagcatcccaaaaacatagaaaatgaaaagg |
27647088 |
T |
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