View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_low_20 (Length: 244)
Name: NF15988_low_20
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 42754053 - 42753823
Alignment:
| Q |
7 |
aggagtagcatagggggactaaagatccgaattttaaaataaccttcatttttctgaaga--------ccaaaagtgcatttaagccttattattctaac |
98 |
Q |
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| T |
42754053 |
aggagtaaaatagggggactaaagatccgaattttaaaataaccttcatttttctgaagataaggggaccaaaattgcatttaagccttattattctaac |
42753954 |
T |
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| Q |
99 |
tatttcaatggtataatgtatcaatactattgttttctttgtagattagcatcaacgccagctatgttcaatagcacactcacaaaggatgaagcatttt |
198 |
Q |
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| T |
42753953 |
tatttcaatggtataatgtatcaatactattgttttctttgtagattagcatcaacgccagctatgttcaatagcacactcacaaaggatgaagcatttt |
42753854 |
T |
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| Q |
199 |
tatgtcctgttgacgggtctattatgataac |
229 |
Q |
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| T |
42753853 |
tatgtcctgttgacgggtctattatgataac |
42753823 |
T |
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