View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_low_21 (Length: 240)
Name: NF15988_low_21
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3915672 - 3915452
Alignment:
| Q |
1 |
catctcagagagttggttatgggaaagatcactgccacatagaagcaaatagaataatcaagggaataaaacaaataaactaatacttaaaattttcatt |
100 |
Q |
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| T |
3915672 |
catctcagagagttggttatgggaaagatcactgccacatagaagcaaatagaataatcaagggaataaaacaaataaactaatacttaaaattttcatt |
3915573 |
T |
|
| Q |
101 |
agaaaaatatataacttacatttccatgatacttttgagattaccaaactctgcgggaataggtcctgttaaattgttcttgctcagattcctaacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3915572 |
agaaaaatatataacttacatttccatgatacttttgagattaccaaactctgcgggaataggtcctgttaaattgtttctgctcagattcctaacaaaa |
3915473 |
T |
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| Q |
201 |
tgagtacaaacaattcgtaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3915472 |
tgagtacaaacaattcgtaat |
3915452 |
T |
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