View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15988_low_5 (Length: 404)

Name: NF15988_low_5
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15988_low_5
NF15988_low_5
[»] chr5 (6 HSPs)
chr5 (18-175)||(41341894-41342050)
chr5 (175-286)||(41341697-41341810)
chr5 (284-389)||(41341555-41341669)
chr5 (323-389)||(5963783-5963849)
chr5 (333-389)||(41340379-41340434)
chr5 (333-389)||(34103654-34103710)
[»] chr6 (11 HSPs)
chr6 (27-175)||(2366594-2366741)
chr6 (19-175)||(2361987-2362142)
chr6 (317-389)||(22605241-22605313)
chr6 (66-165)||(2356308-2356406)
chr6 (26-164)||(2349664-2349801)
chr6 (324-382)||(9362847-9362905)
chr6 (27-128)||(2338656-2338757)
chr6 (175-281)||(2361795-2361903)
chr6 (336-381)||(22605025-22605070)
chr6 (175-279)||(2366401-2366507)
chr6 (332-375)||(21118923-21118966)
[»] chr3 (6 HSPs)
chr3 (46-171)||(4303756-4303880)
chr3 (321-385)||(23162008-23162072)
chr3 (321-389)||(17731894-17731962)
chr3 (321-389)||(19033125-19033193)
chr3 (333-389)||(16869799-16869855)
chr3 (335-375)||(40196115-40196155)
[»] chr7 (4 HSPs)
chr7 (317-389)||(27391755-27391827)
chr7 (335-383)||(8802310-8802358)
chr7 (335-389)||(8802600-8802654)
chr7 (326-389)||(48071486-48071549)
[»] chr4 (3 HSPs)
chr4 (22-134)||(5805532-5805644)
chr4 (319-385)||(16559390-16559456)
chr4 (336-376)||(1868164-1868204)
[»] scaffold0014 (1 HSPs)
scaffold0014 (338-389)||(197827-197878)
[»] chr8 (1 HSPs)
chr8 (318-385)||(2954494-2954562)
[»] chr1 (1 HSPs)
chr1 (335-389)||(25293589-25293643)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 41342050 - 41341894
Alignment:
Q  18 attctcactcaaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggcca 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||| |||||||||||||    
T  41342050 attctcactcaaagtcctattatg-cgatgctccttcaacatatcacctaaaatcttgtccaattctttagaaaaaaatttcattgccttcacatggcca 41341952  T
Q  118 ccaaaatcaaaccattttagaaaaaggaagagcatcacccaccgtgaacacccctaac 175  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  41341951 ccaaaatcaaaccattttagaaaagggaagagcaccacccaccgtgaacacccctaac 41341894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 175 - 286
Target Start/End: Complemental strand, 41341810 - 41341697
Alignment:
Q  175 cccaaccaacattggaagaacaatggttttactcaattgagtaaaacattgtttcaagtccaccaacac--agtttgatgacttgttctctctactacac 272  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  41341810 cccaaccaacattggaagaacaatgtttttactcaattgagtaaaacattgtttcaagtccaccaacacatagtttgatgacttgttctctctactacac 41341711  T
Q  273 caaacattgtagac 286  Q
    ||||||||||||||    
T  41341710 caaacattgtagac 41341697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 389
Target Start/End: Complemental strand, 41341669 - 41341555
Alignment:
Q  284 gacacagaaatgttgtctttgtataacacggctattgttggggagtccggggagc---------ggcaatgggccaaacgtccatgaccataagagactt 374  Q
    ||||| |||||||||| |||| || ||||| ||||||||||||||| ||||||||         |||||||||||||||||||| ||| |||||||||||    
T  41341669 gacacggaaatgttgtatttgcatcacacgactattgttggggagtacggggagccccaggagcggcaatgggccaaacgtccaggactataagagactt 41341570  T
Q  375 aaacaccacattctt 389  Q
    |||||||||||||||    
T  41341569 aaacaccacattctt 41341555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 5963849 - 5963783
Alignment:
Q  323 ggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    |||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  5963849 ggggagccccgggagcggcaatgggtcaaacgtccaggaccataagagacttaaacaccacactctt 5963783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 41340434 - 41340379
Alignment:
Q  333 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  41340434 gggagcggcaatgggc-aaacgtccaagaccataagagacttaaacaccacactctt 41340379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 34103710 - 34103654
Alignment:
Q  333 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    ||||||||||||||| |||||||| | | |||||||||| |||||||||||| ||||    
T  34103710 gggagcggcaatgggtcaaacgtctaggtccataagagatttaaacaccacactctt 34103654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 2366741 - 2366594
Alignment:
Q  27 caaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatca 126  Q
    |||| |||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |  |||||| | ||||||||||||||||||||||    
T  2366741 caaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatca 2366642  T
Q  127 aaccattttagaaaaaggaagagcatcacccaccgtgaacacccctaac 175  Q
    |||||||||||  |||||||  ||||| || |  |||||||||||||||    
T  2366641 aaccattttag-taaaggaatggcatctcctattgtgaacacccctaac 2366594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 2362142 - 2361987
Alignment:
Q  19 ttctcactcaaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccac 118  Q
    |||| ||||||| |||| ||||||||  |||| | |||||  ||||||||||||||||||||||||||||||| |  |||||| | ||||||||||||||    
T  2362142 ttcttactcaaactccttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacatggccac 2362043  T
Q  119 caaaatcaaaccattttagaaaaaggaagagcatcacccaccgtgaacacccctaac 175  Q
    ||||||||||||||||||| ||||||||  ||||| || |  |||||||||||||||    
T  2362042 caaaatcaaaccattttag-aaaaggaatggcatctcctattgtgaacacccctaac 2361987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 22605241 - 22605313
Alignment:
Q  317 attgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22605241 attgttggggagccccgggagcggcaatgggccaaacgtccaagaccataagagacttaaacaccacattctt 22605313  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 2356406 - 2356308
Alignment:
Q  66 taaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatcaaaccattttagaaaaaggaagagcatcacccaccgtgaa 165  Q
    ||||||| |||||||||| ||||||| ||||||||| |  ||||||||||||||||||||||||| || || || |||||| |||||| |||||||||||    
T  2356406 taaaatcatgtccaattccttagaagtttttttcatagctttcacatggccaccaaaatcaaaccgttcta-aacaaggaatagcatctcccaccgtgaa 2356308  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 2349801 - 2349664
Alignment:
Q  26 tcaaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatc 125  Q
    |||||||||| |||||||||||||||||||||   ||||||||||| | ||||| |||  |||||| ||  | ||| | ||||| ||| |||||||||||    
T  2349801 tcaaagtccttttatggcgatgctccttcaaccactcacctaaaatttcgtccatttccgtagaagtttcatccatggccttcatatgaccaccaaaatc 2349702  T
Q  126 aaaccattttagaaaaaggaagagcatcacccaccgtga 164  Q
    ||||||||||| || |||||| | |||| ||||||||||    
T  2349701 aaaccatttta-aacaaggaataacatctcccaccgtga 2349664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 382
Target Start/End: Original strand, 9362847 - 9362905
Alignment:
Q  324 gggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacacca 382  Q
    ||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  9362847 gggagccccgggagcggcaatgggacaaacgtccaggaccataagagacttaaacacca 9362905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 2338757 - 2338656
Alignment:
Q  27 caaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatca 126  Q
    ||||||||| ||||||||| |||||||||||   ||| | |||||||||||||| || || |||| || |||||| | ||||||||  ||||||||||||    
T  2338757 caaagtccttttatggcgacgctccttcaaccactcatcaaaaatcttgtccaactccttggaagtttctttcatggtcttcacataaccaccaaaatca 2338658  T
Q  127 aa 128  Q
    ||    
T  2338657 aa 2338656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 2361903 - 2361795
Alignment:
Q  175 cccaaccaacattggaagaacaatggttttactcaattgagtaaaacattgtttcaagtccaccaacac--agtttgatgacttgttctctctactacac 272  Q
    |||||||| || ||||||||||||| |   ||| ||||||||||| ||||| || || ||||||||| |  |||||||||||| ||||| | ||||| ||    
T  2361903 cccaaccagcactggaagaacaatgttgaaacttaattgagtaaaccattgctttaactccaccaacgcgtagtttgatgactcgttctttttactaaac 2361804  T
Q  273 caaacattg 281  Q
    |||||||||    
T  2361803 caaacattg 2361795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 22605025 - 22605070
Alignment:
Q  336 agcggcaatgggccaaacgtccatgaccataagagacttaaacacc 381  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||    
T  22605025 agcggcaatgggccaaatgtccaagaccataagagagttaaacacc 22605070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 2366507 - 2366401
Alignment:
Q  175 cccaaccaacattggaagaacaatggttttactcaattgagtaaaacattgtttcaagtccaccaacac--agtttgatgacttgttctctctactacac 272  Q
    |||||||| |||||||||||||||  |   |||||||||||| || ||||| ||||  |||||||||||  ||||||||||||  |||| | ||||| ||    
T  2366507 cccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgcttcatctccaccaacacgtagtttgatgactcattctttttactaaac 2366408  T
Q  273 caaacat 279  Q
    |||||||    
T  2366407 caaacat 2366401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 21118923 - 21118966
Alignment:
Q  332 ggggagcggcaatgggccaaacgtccatgaccataagagactta 375  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  21118923 ggggagcggcaatgggccagacgtccaggactataagagactta 21118966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 4303880 - 4303756
Alignment:
Q  46 tgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaaaatcaaaccattttagaaaaagga 145  Q
    ||||||| ||||| |||||||| |||||||||||  ||||| | || ||||||||| | |||||||||||| ||||||||||||||||||| ||||||||    
T  4303880 tgctcctccaacaaatcacctataatcttgtccatctctttggtagcttttttcatggccttcacatggcccccaaaatcaaaccatttta-aaaaagga 4303782  T
Q  146 agagcatcacccaccgtgaacacccc 171  Q
    |||||||| ||||| |||||||||||    
T  4303781 agagcatctcccactgtgaacacccc 4303756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 321 - 385
Target Start/End: Complemental strand, 23162072 - 23162008
Alignment:
Q  321 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacat 385  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||    
T  23162072 ttggggagtccggggagcgacaatgggccaaacgtccaggaccataagaaaattaaacaccacat 23162008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 17731894 - 17731962
Alignment:
Q  321 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    |||||||| || ||||||||||||||| |||||||  | ||||||||| ||||| ||||||||| ||||    
T  17731894 ttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactctt 17731962  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 19033125 - 19033193
Alignment:
Q  321 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    |||||||| || ||||||||||||||| |||||||  | ||||||||| ||||| ||||||||| ||||    
T  19033125 ttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactctt 19033193  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 16869799 - 16869855
Alignment:
Q  333 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    ||||||||||||| || |||  |||| |||| |||||||||||||||||||| ||||    
T  16869799 gggagcggcaatgtgctaaatatccacgaccttaagagacttaaacaccacactctt 16869855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 40196115 - 40196155
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgaccataagagactta 375  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  40196115 gagcggcaatgggccaaacatctaagaccataagagactta 40196155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 27391755 - 27391827
Alignment:
Q  317 attgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    ||||||||||||| ||||||||||||||| ||||||||| || ||| ||||||||||||||||||||| ||||    
T  27391755 attgttggggagttcggggagcggcaatgagccaaacgttcaagactataagagacttaaacaccacactctt 27391827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 8802358 - 8802310
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccac 383  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8802358 gagcggcaatgggccaaacgtccaagaccataagagacttaaacaccac 8802310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 8802654 - 8802600
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||    
T  8802654 gagcggcaatgggtcaaatgtccatgaccataagagacttaaacaccacactctt 8802600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 48071549 - 48071486
Alignment:
Q  326 gagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    |||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||| ||||    
T  48071549 gagtcccggaagcggcaatgggccaaacgtccaagatcataagagacttaaacatcacactctt 48071486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 5805532 - 5805644
Alignment:
Q  22 tcactcaaagtcctattatggcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaagattttttcattggcttcacatggccaccaa 121  Q
    ||||||||||| || ||||||||  ||||||| ||||| ||||||||||| |  |||||||| ||||||| ||  ||||| | ||| ||||| |||||||    
T  5805532 tcactcaaagttcttttatggcggcgctcctttaacatctcacctaaaatttcatccaattccttagaagtttcattcatggcctttacatgaccaccaa 5805631  T
Q  122 aatcaaaccattt 134  Q
    |||||||||||||    
T  5805632 aatcaaaccattt 5805644  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 16559456 - 16559390
Alignment:
Q  319 tgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacat 385  Q
    |||||||||||||||||||||||||||| ||||||||  | ||  |||||||||||| |||||||||    
T  16559456 tgttggggagtccggggagcggcaatggaccaaacgtttaggattataagagacttagacaccacat 16559390  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 1868204 - 1868164
Alignment:
Q  336 agcggcaatgggccaaacgtccatgaccataagagacttaa 376  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  1868204 agcggcaatgggccaaacgtccaggatcataagagacttaa 1868164  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 197878 - 197827
Alignment:
Q  338 cggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| ||||    
T  197878 cggcaatgagccaaacgtccaggaccataagagacttaaacaccacactctt 197827  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 2954494 - 2954562
Alignment:
Q  318 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacc-ataagagacttaaacaccacat 385  Q
    |||||||| || || ||||||||||||||| |||||||||| |||| |||||||||||| || ||||||    
T  2954494 ttgttgggaagccccgggagcggcaatgggtcaaacgtccaggaccaataagagacttagacgccacat 2954562  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 25293589 - 25293643
Alignment:
Q  335 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattctt 389  Q
    ||||||||||||| ||||| | || ||||||||||||||| ||||||||| ||||    
T  25293589 gagcggcaatgggtcaaacatacaggaccataagagacttgaacaccacactctt 25293643  T

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