View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_low_6 (Length: 385)
Name: NF15988_low_6
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 49010035 - 49009666
Alignment:
| Q |
1 |
cttggtctctagaaatttctttttgcaaacattcacatcttacaataaaacaatattgtacatagtatagtatagcatcatatttctctgaagacaatca |
100 |
Q |
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| T |
49010035 |
cttggtctctagaaatttctttttgcaaacattcatatcttacaataaaacaatattgtacatagtatagtatagcatcatatttctctgaagacaatta |
49009936 |
T |
|
| Q |
101 |
attgatggctctctaagattaatggcaatgctattaacctacttgtcaatatccatgttgttgttttggatttcatttgcaatggtaaatttcacatcca |
200 |
Q |
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| T |
49009935 |
attgatggctctctaagattaatggcaatgctattaacctacttgtcaatatccatgttgttgttttggatttcatttgcaatggtaaatttcacatcca |
49009836 |
T |
|
| Q |
201 |
caatttaattgctcaaaagtctccgaacatagcctagaaaatgcacgaccatatccttcctaattctactcaaaatgactctatttattggaagcatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49009835 |
caatttaattgctcaaaagtctccgaacatagcctagaaaatgcacgaccatatccttcctaattctactcaaaatgactctatttattggaagcatttt |
49009736 |
T |
|
| Q |
301 |
gaatcaaatttgttcatctttaaaaatgtttttggttatttgaatcaaccttatttgttggcctcctttg |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49009735 |
gaatcaaatttgttcatctttaaaaatgtttttggttatttgaatcaaccttatttgttggcctcctttg |
49009666 |
T |
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