View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_low_7 (Length: 359)
Name: NF15988_low_7
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 15823839 - 15823527
Alignment:
| Q |
12 |
agcataggtaagatattgttttttcttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaaca |
111 |
Q |
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||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
15823839 |
agcataggtaagatattctttttccttagtaaatcacttgtttcctttgggaaacgacttatcattggtgaagctgtactcgaaattcatatcaggaaca |
15823740 |
T |
|
| Q |
112 |
ccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatcttaatggctgaga |
211 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
15823739 |
ccacatcgtggtaacaagatttgttgtgaagtctcagtgtttaggtagccattagtaacttggagattgaaattttgttggtagatcttaatggctgaca |
15823640 |
T |
|
| Q |
212 |
ttgtttgttggtctagaacattactgaatggcccatattgttggaggtagccgaaatcgtacaaatattgtttgattcgacataggccttgaatatcttc |
311 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| || |||| |
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| T |
15823639 |
ttgtttgttggtctagaacattattgaatggcccatattgttggaggtagccgaaatagtacaaatattgtttgatttgatataggccttgtatcacttc |
15823540 |
T |
|
| Q |
312 |
gtctggttgctct |
324 |
Q |
| |
|
| || |||||||| |
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| T |
15823539 |
ggcttgttgctct |
15823527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 288
Target Start/End: Complemental strand, 15836369 - 15836259
Alignment:
| Q |
178 |
ttgaaattttgttggtagatcttaatggctgagattgtttgttggtctagaacattactgaatggcccatattgttggaggtagccgaaatcgtacaaat |
277 |
Q |
| |
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||||||| | |||||||| |||||| |||| ||| ||||| |||||||||| ||| |||| |||||| |||||| |||||||||||||||| |||||| |
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| T |
15836369 |
ttgaaatatcgttggtaggtcttaagggctaagactgtttcttggtctagagtgttattgaacggcccagattgttcgaggtagccgaaatcggacaaat |
15836270 |
T |
|
| Q |
278 |
attgtttgatt |
288 |
Q |
| |
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||||||||||| |
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| T |
15836269 |
attgtttgatt |
15836259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 15813562 - 15813433
Alignment:
| Q |
100 |
atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatct |
199 |
Q |
| |
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|||||||||| |||||| || |||||| |||||| |||| |||||||||||||||||| | ||||||||||||| |||||| |||||||||| ||| |
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| T |
15813562 |
atatcaggaataccacatcgcggtaacgagattttttgtaaagtctcggtgtttaggt---taccagtaacttggagattgaaaaattgttggtaggtct |
15813466 |
T |
|
| Q |
200 |
taatggctgagattgtttgttggtctagaacat |
232 |
Q |
| |
|
|||| || || ||||||| | ||||||||||| |
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| T |
15813465 |
taatagcggatattgtttcctcgtctagaacat |
15813433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 15837927 - 15837838
Alignment:
| Q |
12 |
agcataggtaagatattgttttttcttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcag |
106 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||| || |||| ||||||||||||||||||| ||||||| |
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| T |
15837927 |
agcataggtaagatattctttttccttagtaaaccacttgtttcctttcggaaacaacttatc-----tgaagctgtactcgaaattcatatcag |
15837838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 15721136 - 15721058
Alignment:
| Q |
79 |
gtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggt |
157 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| | ||||||||||| | ||||| ||||||||| || ||||| |
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|
| T |
15721136 |
gtgaagctgtactcaaaattcatatcaggaacaccacatcttggtaacaagagtagttgtaaagtctcggagtctaggt |
15721058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 15723640 - 15723495
Alignment:
| Q |
82 |
aagctgtactcgaaattaatatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttga |
181 |
Q |
| |
|
|||| ||||||| | || |||||||||| |||||| | ||| ||| ||| ||||||| |||||||||||||||||| | ||||||||||||| |||| |
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|
| T |
15723640 |
aagccgtactcgtatttcatatcaggaataccacatcttggaaacgagaattgttgtaaagtctcggtgtttaggt---gaccagtaacttggagattga |
15723544 |
T |
|
| Q |
182 |
aattttgttggtagatcttaatggctgagattgtttgttggtctagaac |
230 |
Q |
| |
|
|| |||||||||| ||||||| || || ||||||| | ||||||||| |
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| T |
15723543 |
aaaattgttggtaggtcttaatagcggatattgtttccttgtctagaac |
15723495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 15819313 - 15819204
Alignment:
| Q |
178 |
ttgaaattttgttggtagatcttaatggctgagattgtttgttggtctagaacattactgaatggcccatattgttggaggtagccgaaatcgtacaaat |
277 |
Q |
| |
|
||||||| | |||||||| |||||| |||| ||| ||||| |||||||||| ||| |||| |||||| |||||| |||||||||||||| | ||||| |
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| T |
15819313 |
ttgaaatatcgttggtaggtcttaagggctaagactgtttcttggtctagagtgttattgaacggcccagattgttcgaggtagccgaaattttgcaaat |
15819214 |
T |
|
| Q |
278 |
attgtttgat |
287 |
Q |
| |
|
|||||||||| |
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|
| T |
15819213 |
attgtttgat |
15819204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 15819452 - 15819363
Alignment:
| Q |
36 |
cttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaa |
125 |
Q |
| |
|
|||||||||||| | ||||||||| ||| |||| |||||||||||| || |||| |||||| ||||||||||||||||| |||||||| |
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|
| T |
15819452 |
cttaggaaaccattggtttcctttcggatacgatatatcattggtggagtcgtacgtgaaattcatatcaggaacaccacatcgtggtaa |
15819363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 15717293 - 15717236
Alignment:
| Q |
100 |
atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggt |
157 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||||||| |||||||||||| ||||| |
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|
| T |
15717293 |
atatcgggaacaccacatcgtggtaacatgatttgttgtaaagtctcggtgtctaggt |
15717236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 15839501 - 15839409
Alignment:
| Q |
12 |
agcataggtaagatattgttttttcttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaa |
109 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||||||||||| ||| |||||| || |||| ||||||||||||||||||| |||||||||| |
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|
| T |
15839501 |
agcataggtaagatattctttttcctcagtaaaccacttgtttagtttcggaaacaacttatc-----tgaagctgtactcgaaattcatatcaggaa |
15839409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 15729844 - 15729716
Alignment:
| Q |
100 |
atatcaggaacaccacaacgtggtaacaagatttgtt-gtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatc |
198 |
Q |
| |
|
|||||||||| |||||| || |||||| |||||| || || |||||||||||||||||| | ||||||||||||| |||||| ||||||||| || |
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|
| T |
15729844 |
atatcaggaataccacatcgcggtaacgagatttttttgtaaagtctcggtgtttaggt---gaccagtaacttggagattgaaaaattgttggtacgtc |
15729748 |
T |
|
| Q |
199 |
ttaatggctgagattgtttgttggtctagaac |
230 |
Q |
| |
|
||||| || || ||||||| | ||||||||| |
|
|
| T |
15729747 |
ttaatagcggatattgtttcctcgtctagaac |
15729716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 15836502 - 15836413
Alignment:
| Q |
36 |
cttaggaaaccacttgtttcctttgggaaacgacatatcattggtgaagctgtactcgaaattaatatcaggaacaccacaacgtggtaa |
125 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| || ||||||||||| ||| |||||| ||| | ||||||||||||| || |||||||| |
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|
| T |
15836502 |
cttaggaaaccattggtttcctttcggaaaagatatatcattggttaagttgtacttcaaaatcctatcaggaacaccgcatcgtggtaa |
15836413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 33100239 - 33100110
Alignment:
| Q |
100 |
atatcaggaacaccacaacgtggtaacaagatttgttgtgaagtctcggtgtttaggtagccatcagtaacttggagtttgaaattttgttggtagatct |
199 |
Q |
| |
|
|||||||||| |||||| || |||||| |||||| |||| |||||||||||||||||| | ||||||||||||| |||||| |||||||||| ||| |
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|
| T |
33100239 |
atatcaggaataccacatcgcggtaacgagattttttgtaaagtctcggtgtttaggt---taccagtaacttggagattgaaaaattgttggtaggtct |
33100143 |
T |
|
| Q |
200 |
taatggctgagattgtttgttggtctagaacat |
232 |
Q |
| |
|
|||| || || ||||||| | ||||||||||| |
|
|
| T |
33100142 |
taatagcggatattgtttcctcgtctagaacat |
33100110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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