View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15988_low_8 (Length: 336)
Name: NF15988_low_8
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 1623299 - 1623615
Alignment:
| Q |
1 |
accccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaagaaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
1623299 |
accccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactcttgagaattgttgccaaggccttcccaagaaggtt |
1623398 |
T |
|
| Q |
101 |
ttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgaccttggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623399 |
ttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgaccttggg |
1623498 |
T |
|
| Q |
201 |
ctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623499 |
ctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgcc |
1623598 |
T |
|
| Q |
301 |
atagatgaagcattgtc |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
1623599 |
atagatgaagcattgtc |
1623615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 1629475 - 1629791
Alignment:
| Q |
1 |
accccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaagaaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
1629475 |
accccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggtctgcccaagaaggtt |
1629574 |
T |
|
| Q |
101 |
ttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgaccttggg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1629575 |
ttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttggg |
1629674 |
T |
|
| Q |
201 |
ctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgcc |
300 |
Q |
| |
|
| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
1629675 |
cagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaataccactgcggcgttgccaaagatgaagtctacggtgcc |
1629774 |
T |
|
| Q |
301 |
atagatgaagcattgtc |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
1629775 |
atagatgaagcattgtc |
1629791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 10821223 - 10820905
Alignment:
| Q |
1 |
accccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaagaaggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
10821223 |
accccatggagaccaacctagggggctgactaaagtgtccataaaagttttcatcaccataactcttgaatattgttgccaaggtcttcctaagaaggtt |
10821124 |
T |
|
| Q |
101 |
ttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgaccttggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
10821123 |
ttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatggatcacctcgaccttggg |
10821024 |
T |
|
| Q |
201 |
ctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgcc |
300 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
10821023 |
cagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgttgcaattttggaataccactgcagcgttgccaaagatgaagtctacggtgcc |
10820924 |
T |
|
| Q |
301 |
atagatgaagcattgtctg |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10820923 |
atagatgaagcattgtctg |
10820905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 1606177 - 1606493
Alignment:
| Q |
1 |
accccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaagaaggtt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1606177 |
accccatggagaccaacccagggggcttactaaagtgtccatgaaagttttcatcaccataactcttgaatattgttgccaaggcctgcccaagaaggtt |
1606276 |
T |
|
| Q |
101 |
ttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgaccttggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1606277 |
ttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttggg |
1606376 |
T |
|
| Q |
201 |
ctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgcc |
300 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||||||||| |
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|
| T |
1606377 |
ctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgcc |
1606476 |
T |
|
| Q |
301 |
atagatgaagcattgtc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1606477 |
atagatgaagcattgtc |
1606493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 2576132 - 2576071
Alignment:
| Q |
245 |
atgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgccatagat |
306 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||| || |||||||| |||||||||||||| |
|
|
| T |
2576132 |
atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat |
2576071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 18780993 - 18781311
Alignment:
| Q |
1 |
accccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaagaaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18780993 |
accccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactcttgaatattgttgccaaggcctgcccaagaaggtt |
18781092 |
T |
|
| Q |
101 |
ttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgaccttggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18781093 |
ttgtacttgtcaacaacaggctttagatctgatgcagccataatttgacaattgtggaatgaaattccagtgttttggaatgggtcacctcgaccttggg |
18781192 |
T |
|
| Q |
201 |
ctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgcc |
300 |
Q |
| |
|
| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||| |
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|
| T |
18781193 |
ccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaacactactgcggcgttgccaaagataaagtcgacggtgcc |
18781292 |
T |
|
| Q |
301 |
atagatgaagcattgtctg |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18781293 |
atagatgaagcattgtctg |
18781311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 44498044 - 44497992
Alignment:
| Q |
251 |
cagttttggaatactactgcagcgttgccaaagatgaagtctacggtgccata |
303 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||| || ||||| |
|
|
| T |
44498044 |
cagttttggaataccacagctgcgttgccaaagatgaagtctacagttccata |
44497992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 2 - 307
Target Start/End: Original strand, 12802560 - 12802865
Alignment:
| Q |
2 |
ccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactcttgaatattgttgccaaggccttcccaagaaggttt |
101 |
Q |
| |
|
||||||||||||||||| | || || || ||| | ||||| || | |||||| |||| ||||| || ||| |||||| |||| ||||||||||| | |
|
|
| T |
12802560 |
ccccatggagaccaacccattggactgaccaaattatccatgaatgatttcatgaccacaactctagagtatctttgccagggccggcccaagaaggtgt |
12802659 |
T |
|
| Q |
102 |
tgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatgggtcaccacgaccttgggc |
201 |
Q |
| |
|
|| | || | ||||| ||||| | ||||| || |||||||| ||| | ||||| | ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
12802660 |
tgaatttcccgacaacgggcttgaaatctggcgcggccctaatctgagagttgtgaatcgaaattccagtgttttgaaatgggtcatcacgaccttgggc |
12802759 |
T |
|
| Q |
202 |
tgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgcca |
301 |
Q |
| |
|
||||||||||| |||||||| | |||||| |||| | | ||| | ||||||||||| ||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
12802760 |
cgtgatcatgtttgcttggccgtttaaaggccttctaacaagaatcatgcagttttggaaaactacggctgcgttgccaaagatgaagtcaacggtgcca |
12802859 |
T |
|
| Q |
302 |
tagatg |
307 |
Q |
| |
|
|||||| |
|
|
| T |
12802860 |
tagatg |
12802865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 8767130 - 8767056
Alignment:
| Q |
233 |
tttcttgcgaaaatgttacagttttggaatactactgcagcgttgccaaagatgaagtctacggtgccatagatg |
307 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| || ||||| ||||||||||| || || |||||||||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaaatcaactgtgccatagatg |
8767056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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