View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15988_low_9 (Length: 336)
Name: NF15988_low_9
Description: NF15988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15988_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 49008706 - 49008371
Alignment:
| Q |
1 |
ctagcattattgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49008706 |
ctagcattattgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggttagaacaattgttaaaagacgatctcgtgatggctgcgatattct |
49008607 |
T |
|
| Q |
101 |
tctgagtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008606 |
tctgagtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtcc |
49008507 |
T |
|
| Q |
201 |
ggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008506 |
ggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagcc |
49008407 |
T |
|
| Q |
301 |
gatctaatggctgctgggctccaacaagggtgcatt |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49008406 |
gatctaatggctgctgggctccaacaagggtgcatt |
49008371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 21686706 - 21687010
Alignment:
| Q |
21 |
aataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtgaagtttaatgca |
120 |
Q |
| |
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||||||||||||||| ||||| || || ||||| | ||| |||| || ||||| ||||| || |||| ||| || || || |||||||| | |||| |
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| T |
21686706 |
aataaaagaagggtagttaagatctaaggaaggtttagagcaatcattgaaagaagatcttgtaatggcactgatgtttttttgtgtgaagttaagtgca |
21686805 |
T |
|
| Q |
121 |
catagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtg |
220 |
Q |
| |
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|| |||||||| | |||||||||| || |||||||||||| |||||||||||||||||||| || || ||||| || |||||||| || ||||| | |
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| T |
21686806 |
caaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctcccaatgcaaaaggag |
21686905 |
T |
|
| Q |
221 |
aagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctgggct |
320 |
Q |
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|||| ||||| |||||| ||||||||| |||| |||| || || |||||||| ||||||||||||||||| || ||||| ||||| | || ||||| |
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| T |
21686906 |
ttgctgctctgttaccatttccaatgtctttgatatgttccttagtattgtctaatatgtctgatgttgtcataattgccgacctaatagatgacgggct |
21687005 |
T |
|
| Q |
321 |
ccaac |
325 |
Q |
| |
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||||| |
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| T |
21687006 |
ccaac |
21687010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 106 - 324
Target Start/End: Complemental strand, 8963456 - 8963238
Alignment:
| Q |
106 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc |
205 |
Q |
| |
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|||||||| | |||||| |||| ||| |||||||||||| || |||||||||||| ||||| ||||||||| |||| || |||||||| || |||| |
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| T |
8963456 |
gtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctc |
8963357 |
T |
|
| Q |
206 |
ccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatct |
305 |
Q |
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|||| || ||||||| |||| | ||| | | || ||||||||| |||| ||||| || ||||| || || |||||||||||||||||||| ||||| || |
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| T |
8963356 |
ccaatgcaaaaggtgttgctgctatgttatcttttccaatgtctttgataagttccttagtgttatcaaatatgtctgatgttgtcatcattgccgacct |
8963257 |
T |
|
| Q |
306 |
aatggctgctgggctccaa |
324 |
Q |
| |
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||| |||| ||||||||| |
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| T |
8963256 |
aatagctgtcgggctccaa |
8963238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 8945531 - 8945712
Alignment:
| Q |
9 |
attgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtg |
108 |
Q |
| |
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||||||||| | |||||||||||||||||||| ||||| ||||| | |||||||| || ||||| ||||| || || | | ||| || || || ||| |
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| T |
8945531 |
attgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtgatgtttttttgtgtg |
8945630 |
T |
|
| Q |
109 |
aagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggat |
190 |
Q |
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| T |
8945631 |
aagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggat |
8945712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 8974937 - 8974634
Alignment:
| Q |
21 |
aataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtgaagtttaatgca |
120 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | |||||||| ||| ||| ||||| || ||| | ||| || || || |||||||| | |||| |
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| T |
8974937 |
aataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgtttttttgtgtgaagttgagtgca |
8974838 |
T |
|
| Q |
121 |
catagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtg |
220 |
Q |
| |
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|| |||||||| |||||||||||| || ||||||||||||||||||| | ||||||| | ||||| |||||||| || ||||| || ||||||| |
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| T |
8974837 |
caaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctccttgtgcaaaaggtg |
8974738 |
T |
|
| Q |
221 |
aagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctgggct |
320 |
Q |
| |
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||| ||| ||| || ||||||||| | |||||||| || || || || || |||||||||||||||||||| || || ||||| ||||| ||||| |
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| T |
8974737 |
ttgctacgttgttaccttttccaatgtcttttatgagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggct |
8974638 |
T |
|
| Q |
321 |
ccaa |
324 |
Q |
| |
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|||| |
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| T |
8974637 |
ccaa |
8974634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 8958527 - 8958330
Alignment:
| Q |
21 |
aataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtgaagtttaatgca |
120 |
Q |
| |
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||||||||||||||| ||||| ||||||||||| ||||| |||| || |||| ||||| ||||||| | ||| || || || | | || | | |||| |
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| T |
8958527 |
aataaaagaagggtagttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgtttttttgtgagtagctaagtgca |
8958428 |
T |
|
| Q |
121 |
catagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaagg |
218 |
Q |
| |
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|| |||||||| |||||||||||| || ||||||||| ||| ||||| |||||||||||||| ||||| | ||| || |||||||| || ||||| |
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| T |
8958427 |
caaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaagg |
8958330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 34962314 - 34962626
Alignment:
| Q |
9 |
attgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtg |
108 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||| ||||| ||||| | |||||||| || |||| ||||| ||||||| | ||| || || || | | |
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| T |
34962314 |
attgaaaaaagcaataaaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatggtagtgatgtttttttgtgag |
34962413 |
T |
|
| Q |
109 |
aagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctccca |
208 |
Q |
| |
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| || | |||||| ||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||| ||||| | ||| || ||||||| |
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|
| T |
34962414 |
tatttaagtgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctccca |
34962513 |
T |
|
| Q |
209 |
aagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaat |
308 |
Q |
| |
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| || ||||||| |||| | ||| | | ||||||||| |||| |||| || | || || || ||||||||||||||||| || ||||| | ||| |
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| T |
34962514 |
atgcaaaaggtgttgctgctttgt---ctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtcattattgccgaccgaat |
34962610 |
T |
|
| Q |
309 |
ggctgctgggctccaa |
324 |
Q |
| |
|
||||||||||||||| |
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|
| T |
34962611 |
tgctgctgggctccaa |
34962626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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