View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15989_high_2 (Length: 359)

Name: NF15989_high_2
Description: NF15989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15989_high_2
NF15989_high_2
[»] chr1 (6 HSPs)
chr1 (10-359)||(42202994-42203335)
chr1 (10-359)||(42211862-42212203)
chr1 (96-359)||(42421044-42421306)
chr1 (96-359)||(42217915-42218184)
chr1 (10-75)||(42421338-42421403)
chr1 (10-70)||(42217818-42217878)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 42202994 - 42203335
Alignment:
Q  10 agcagagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaatt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42202994 agcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaatt 42203093  T
Q  110 ggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatc 209  Q
    ||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42203094 ggtcataataggcaacggagaactagaaga--------cagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatc 42203185  T
Q  210 ctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42203186 ctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcct 42203285  T
Q  310 ataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaa 359  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  42203286 ataattgtctccaccggtcaggtattatccacaatcctttttgtgcgaaa 42203335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 42211862 - 42212203
Alignment:
Q  10 agcagagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaatt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42211862 agcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaatt 42211961  T
Q  110 ggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatc 209  Q
    ||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42211962 ggtcataataggcaacggagaactagaaga--------cagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatc 42212053  T
Q  210 ctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42212054 ctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcct 42212153  T
Q  310 ataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaa 359  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  42212154 ataattgtctccaccggtcaggtattatccacaatcctttttgtgcgaaa 42212203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 96 - 359
Target Start/End: Complemental strand, 42421306 - 42421044
Alignment:
Q  96 gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt 195  Q
    |||||||| ||||||||||||| | ||||||||||||||| |||        || |||||||||||||||||| ||||||||||||||||||||||||||    
T  42421306 gaattacatgaattggtcataacaagcaacggagaactaggaga--------cagttttgaaaccgtctcatctcttcttaggaaactgaaagactgcgt 42421215  T
Q  196 gctcacagaaaatcctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtc----------------gattttcgatgt 279  Q
    |||| |||||||||||||||||||||||||||||        || |||||| ||| |||||||||||| |||                |||||||| |||    
T  42421214 gctcgcagaaaatcctgaggttgatacctatgac--------agtgagaat-gttccaattaagcaccggtctcctgtaatcccagatgattttcggtgt 42421124  T
Q  280 cctatatctcttgaactaatgaaagatcctataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaa 359  Q
    |||||||||||||||||||||||||| ||| |||  ||||| ||| ||||||||||||| ||||||||||||||||||||    
T  42421123 cctatatctcttgaactaatgaaagaccctgtaatcgtctcaaccggtcaggtattatcgacaatcctttttgtgcgaaa 42421044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 96 - 359
Target Start/End: Original strand, 42217915 - 42218184
Alignment:
Q  96 gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt 195  Q
    |||||||||||||||||||||| | | ||||||||||||| |||  ||     ||  |||||||| |||||||||||||||||||||||||| ||||| |    
T  42217915 gaattacacgaattggtcataaaaagtaacggagaactaggagac-agttttgaaagttgaaaccatctcatcccttcttaggaaactgaaaaactgcat 42218013  T
Q  196 gctcacagaaaatcctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtc----------------gattttcgatgt 279  Q
    |||| ||||||||||| |||||||||||||||        || ||| |||| |||||||||||||||  |||                ||||||||||||    
T  42218014 gctcgcagaaaatcctaaggttgatacctatg--------agggcgcgaat-gtttcaattaagcactggtctcgtgtaatcccagaggattttcgatgt 42218104  T
Q  280 cctatatctcttgaactaatgaaagatcctataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaa 359  Q
    ||||||||||||||| ||| | |||||||| ||| |||||| ||| ||||||||||||||||||||||||||||| ||||    
T  42218105 cctatatctcttgaattaagggaagatcctgtaattgtctcaaccggtcaggtattatccacaatcctttttgtgtgaaa 42218184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 42421403 - 42421338
Alignment:
Q  10 agcagagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgag 75  Q
    |||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  42421403 agcacagaaagataaagaccctgatcctgctatactcaaaagactctctgagaagttgcatctgag 42421338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 42217818 - 42217878
Alignment:
Q  10 agcagagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcat 70  Q
    |||| ||| |||||||||||||||||||| ||| |||||||| | | ||||||||||||||    
T  42217818 agcacagaaagataaagaccctgatcctgctatcctcaaaagacccactgagaagttgcat 42217878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University