View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15989_high_3 (Length: 339)

Name: NF15989_high_3
Description: NF15989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15989_high_3
NF15989_high_3
[»] chr5 (7 HSPs)
chr5 (63-332)||(37707273-37707542)
chr5 (63-317)||(37443068-37443322)
chr5 (2-68)||(37704454-37704520)
chr5 (2-63)||(37698636-37698697)
chr5 (3-68)||(37698974-37699041)
chr5 (2-60)||(37437520-37437578)
chr5 (159-192)||(39647259-39647292)
[»] chr7 (1 HSPs)
chr7 (236-289)||(34925263-34925316)
[»] chr8 (1 HSPs)
chr8 (209-280)||(11501488-11501559)
[»] chr1 (2 HSPs)
chr1 (165-227)||(4541583-4541645)
chr1 (256-293)||(10363462-10363499)
[»] chr6 (1 HSPs)
chr6 (235-280)||(21901327-21901372)
[»] chr2 (1 HSPs)
chr2 (236-293)||(38434185-38434242)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 63 - 332
Target Start/End: Complemental strand, 37707542 - 37707273
Alignment:
Q  63 tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactgga 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  37707542 tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcggctctagtgtacgccatactgga 37707443  T
Q  163 atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37707442 atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg 37707343  T
Q  263 aacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagatatttcacagtataatctac 332  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  37707342 aacaaagtgttattttccatgatctgcgattctggtgaaaacccacaagatatttcacggtataatctac 37707273  T

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Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 63 - 317
Target Start/End: Complemental strand, 37443322 - 37443068
Alignment:
Q  63 tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactgga 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37443322 tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcagctatagtgtacgccatactgga 37443223  T
Q  163 atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg 262  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||    
T  37443222 atttgaataaatcgttattgttttgcgatacgttattcgatatagttttgttaaatagtggctctagtgtcactgtagcattgtagcttagcaaaatttg 37443123  T
Q  263 aacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagatattt 317  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  37443122 aacaaagtgttattttctgtgatctgcgattctggtgaaaaccaacaagatattt 37443068  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 37704454 - 37704520
Alignment:
Q  2 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttggg 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704454 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttggg 37704520  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 37698636 - 37698697
Alignment:
Q  2 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt 63  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  37698636 accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgtt 37698697  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 37698974 - 37699041
Alignment:
Q  3 ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttggg 68  Q
    |||||||| |||| |||||||||||||| ||||  ||||||||| ||||||||||||||||| |||||    
T  37698974 ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttggg 37699041  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 37437520 - 37437578
Alignment:
Q  2 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt 60  Q
    |||||||||  |||||||||||||||||| |||||| ||||||  ||||||||| ||||    
T  37437520 accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgtttt 37437578  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 39647292 - 39647259
Alignment:
Q  159 tggaatttgaataaatcgttattgttttgcgata 192  Q
    |||||||||||||||||||||||||| |||||||    
T  39647292 tggaatttgaataaatcgttattgttctgcgata 39647259  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 34925316 - 34925263
Alignment:
Q  236 tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgc 289  Q
    |||||||||||||| |||||||||||||||||| || ||||||||| |||||||    
T  34925316 tatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgc 34925263  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 11501559 - 11501488
Alignment:
Q  209 tttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttcc 280  Q
    ||||| ||||||||||| ||||  |||||||||| | |||| |||  ||||||||||||| |||||||||||    
T  11501559 tttgtcaaatagtggctatagtagcattatagcactctagcatagtggaatttgaacaaactgttattttcc 11501488  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 4541583 - 4541645
Alignment:
Q  165 ttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctct 227  Q
    ||||| |||||||||||||||||| ||| | |||||| || ||| |||| |||||||||||||    
T  4541583 ttgaacaaatcgttattgttttgcaatatgctatttggtacagtgttgtcaaatagtggctct 4541645  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 10363462 - 10363499
Alignment:
Q  256 gaatttgaacaaagtgttattttccatgatctgcgatt 293  Q
    ||||||||||||| || |||||||||||||||||||||    
T  10363462 gaatttgaacaaaatgctattttccatgatctgcgatt 10363499  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 21901327 - 21901372
Alignment:
Q  235 ttatagcattgtagcttagcagaatttgaacaaagtgttattttcc 280  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  21901327 ttataacattgtagcgtagcagaatttaaacaaagtgctattttcc 21901372  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 38434185 - 38434242
Alignment:
Q  236 tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgatt 293  Q
    ||||||| |||| | |||||||||||||||||| || |||||||| || |||||||||    
T  38434185 tatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgatt 38434242  T

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