View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15989_high_4 (Length: 304)
Name: NF15989_high_4
Description: NF15989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15989_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 19383550 - 19383767
Alignment:
| Q |
13 |
gagatattccatcaatctctttttataagcacatctaactttttcacctatattaagaaatatttagggaatttaatgtatccattttatatgtaaatct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19383550 |
gagatattccatcaatctctttttataagcacatctaactttttcacctatattaagaaatatttagggaatttaatgtatccattttatatgtaaatct |
19383649 |
T |
|
| Q |
113 |
ttcttaaacaca--gtctttaaatgtctaactttaacttcatattttaaaataaatttatagtatcaatgagaggtatgtttgggaaaatgcacctagtc |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19383650 |
ttcttaaacacactgtctttaaatgtctaactttaacttcatattttaaaataaatttatagtatcaatgagaggtatgtttgggaaaatgcacctagtc |
19383749 |
T |
|
| Q |
211 |
aattgcatgtgagtgtat |
228 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19383750 |
aattgcatgtgagtgtat |
19383767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 3719038 - 3719091
Alignment:
| Q |
226 |
tatctatacttcttacaaagcagaagcgcaaagtttccctgttctatcaactac |
279 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| ||||||| |||||||| |
|
|
| T |
3719038 |
tatctatacttcttacaaagcagaagtgcaaaatttcactgttctgtcaactac |
3719091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 36030894 - 36030823
Alignment:
| Q |
227 |
atctatacttcttacaaagcagaagcgcaaagtttccctgttctatcaactacaagctgattcctgccttctcag |
301 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36030894 |
atctatacttct---aaagcagaagcgcaaattttccctgttctatcaactacaagctgattcctgccttctcag |
36030823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 20549487 - 20549562
Alignment:
| Q |
226 |
tatctatacttcttacaaagcagaagcgcaaagtttccctgttctatcaactacaagctgattcctgccttctcag |
301 |
Q |
| |
|
|||||||||||||||||||| || |||| | |||| |||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
20549487 |
tatctatacttcttacaaagagaaatcgcagattttcgctgttctatcaactaccagctgaatccgcccttctcag |
20549562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University