View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_high_11 (Length: 251)
Name: NF1598_high_11
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42521920 - 42521685
Alignment:
| Q |
1 |
tgatgaataatcttttccatctaaatgcatgcacgcatataaaggatatttggtaaatggattaaccacctgcaaaaataaaagtagcagacaataatgt |
100 |
Q |
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| T |
42521920 |
tgatgaataatcttttccatctaaatgcatgcacgcatataaaggatatttggtaaatggattaaccacctgcaaaaataaaagtagcagacaataatgt |
42521821 |
T |
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| Q |
101 |
tagaaatttatatggtttatatgtcatggtataatctgctaagaaaatatctgcaattaaatgtagaatcggtataccgtagtccagacagcaatcttgg |
200 |
Q |
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| T |
42521820 |
tagaaatttatatggtttatatgtcatggtataatctgctaagaaaatatctgcaattaaatgtagaatcggtataccgtagtccagacagcaatcttgg |
42521721 |
T |
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| Q |
201 |
ttgcaaccaagtcttgaggcaggttaagggtgaatt |
236 |
Q |
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| T |
42521720 |
ttgcaaccaagtcttgaggcaggttaagggtgaatt |
42521685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 19240886 - 19240925
Alignment:
| Q |
38 |
tataaaggatatttggtaaatggattaaccacctgcaaaa |
77 |
Q |
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| T |
19240886 |
tataaaggatatttggtaaatggattaaccacctgcaaaa |
19240925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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