View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1598_high_2 (Length: 626)
Name: NF1598_high_2
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_high_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 45974382 - 45974995
Alignment:
| Q |
19 |
tcagaacaatgaatgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45974382 |
tcagaacaatgaatgatattttggttacctttggcagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtct |
45974481 |
T |
|
| Q |
119 |
cttcaatcat-----gttggtatcaacctttcccatcttcattcgaagttctaatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaat |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45974482 |
cttcaatcatgtcatgttggtatcaacctttcccatcttcattcgaagttctaataggttgtcacagtctctacaagaacacaatcataaatgtaaaaat |
45974581 |
T |
|
| Q |
214 |
atactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaataaaatttctattccttcctaacttaatnnnnnnnn |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45974582 |
atactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaataaaatttctattccttcctaacttaataaaaaaaa |
45974681 |
T |
|
| Q |
314 |
taatgccgatctccataaaaaagttggcatcatttggttcatttctcc-------gtgatac----gctatagcagcgttagtcttatagcataagagaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||||||||||||||||||||||||||||| |
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|
| T |
45974682 |
taatgccgatctccataaaaaagttggcatcatttggttcatttctccgagtgttgtcaaacaactgctatagcagcgttagtcttatagcataagagaa |
45974781 |
T |
|
| Q |
403 |
tttgaacatattgctctttttccgtgatacgctattttgtaaaaaactttgtcaaataaggttcatagtagcgcccctgtagcaggaaaaaggttcaatg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45974782 |
tttgaacatattgctctttttccgtgatacgctattttgtaaaaaactttgtcaaataagattcatagtagcgcccctgtagcaggaaaaaggttcaatg |
45974881 |
T |
|
| Q |
503 |
tgaacctaaatagcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctcccttaataaggttcacggtattaa |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45974882 |
tgaacctaaatagcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctcccttaataaggttcacggtattaa |
45974981 |
T |
|
| Q |
603 |
catcctgacctatg |
616 |
Q |
| |
|
|||||||||||||| |
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|
| T |
45974982 |
catcctgacctatg |
45974995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 45857458 - 45857200
Alignment:
| Q |
20 |
cagaacaatgaatgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtctc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
45857458 |
cagaacaatgaatgatattttggttacctttggcagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctc |
45857359 |
T |
|
| Q |
120 |
ttcaatcatgttggtatcaacctttcccatcttcattcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatact |
218 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||||| | | ||| ||| |||||||| |||||||||||||||||||||||| |||| |
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|
| T |
45857358 |
ttcaatcatgttggtgttaagctttcccatcttcattcgaagttctgaggcagttatcatgatctctacaggaacacaatcataaatgtaaaaatctact |
45857259 |
T |
|
| Q |
219 |
gacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa |
277 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
45857258 |
gacttaaagttcaacatataatattagctaataatttgttaataatttcaatcagaaaa |
45857200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 45870011 - 45869754
Alignment:
| Q |
20 |
cagaacaatgaatgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtctc |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
45870011 |
cagaagaatgaatgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctc |
45869912 |
T |
|
| Q |
120 |
ttcaatcatgttggtatcaacctttcccatcttcattcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatact |
218 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||||| | |||| |||| |||||| | |||||||||||||| ||||||||| |||| |
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|
| T |
45869911 |
ttcaatcatgttggtgttaagctttcccatcttcattcgaagttctgaggcggtagtcatgatctcta-aggaacacaatcataattgtaaaaatctact |
45869813 |
T |
|
| Q |
219 |
gacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa |
277 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
45869812 |
gacttaaagttcaacatataatattagctaataatttgttaataatttcaatcagaaaa |
45869754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 45980826 - 45981083
Alignment:
| Q |
21 |
agaacaatgaatgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtctct |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || |
|
|
| T |
45980826 |
agaacaatgaataatattttggttacctttagaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcatttttccggtccct |
45980925 |
T |
|
| Q |
121 |
tcaatcatgttggtatcaacctttcccatcttcattcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactg |
219 |
Q |
| |
|
|||||| ||||||| | |||||| ||||| | | |||||||| | ||||||||| | ||||| || |||||||| ||||||||||||||| ||||| |
|
|
| T |
45980926 |
tcaatcttgttggtggttagctttcctatcttgagttgaagttctgaggcggttgtcataatctctgcaggaacacaaccataaatgtaaaaatctactg |
45981025 |
T |
|
| Q |
220 |
acttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa |
277 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||| |
|
|
| T |
45981026 |
acttaaagttcaacatataatattagctaatagtttgttaataatttcaatcagaaaa |
45981083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 45964978 - 45965089
Alignment:
| Q |
19 |
tcagaacaatgaatgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45964978 |
tcagaacaatgaatgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtct |
45965077 |
T |
|
| Q |
119 |
cttcaatcatgt |
130 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45965078 |
cttcaatcatgt |
45965089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 395 - 612
Target Start/End: Original strand, 45970242 - 45970455
Alignment:
| Q |
395 |
taagagaatttgaacatattgctctttttccgtgatacgctattttgtaaaaaactttgtcaaataaggttcatagtagcgcccctgtagcaggaaaaag |
494 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || |||||| |||||||||| | ||||||||||| ||||||||| | ||||||||| || |
|
|
| T |
45970242 |
taagagaattagaacatattgctctttttccgtgaaacactatttagtaaaaaact----cgaataaggttcacagtagcgccgcaatagcaggaacaat |
45970337 |
T |
|
| Q |
495 |
gttcaatgtgaacctaaatagcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctcccttaataaggttcac |
594 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||||| ||||||||||| | || ||||| | ||||| ||||| |||||||||||||||| |
|
|
| T |
45970338 |
attcactgtgaacctaaatagcatgccgcgtaacataattttaatgtagcactattgataagagtttggttacagttatttcttccttaataaggttcac |
45970437 |
T |
|
| Q |
595 |
ggtattaacatcctgacc |
612 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45970438 |
ggtattaacatcctgacc |
45970455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 135 - 280
Target Start/End: Original strand, 45969985 - 45970131
Alignment:
| Q |
135 |
atcaacctttcccatcttcattcgaagttctaatcgg-ttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaac |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
45969985 |
atcaacctttcccatcttcattcgaagttccgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaac |
45970084 |
T |
|
| Q |
234 |
atataatattaggtaataatttgttgataattttaatcagaaaataa |
280 |
Q |
| |
|
|||||| |||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
45970085 |
atataacgttagctaataattttttgttaattttaatcagaaaataa |
45970131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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