View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_high_3 (Length: 476)
Name: NF1598_high_3
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 10976162 - 10975703
Alignment:
| Q |
1 |
cacagaccaagaaaaaccaagcaacgatgtaaactcaaatctaaaagcattctcagcagcactagcactctcatcaatcctcatctcatcaccactcccc |
100 |
Q |
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| T |
10976162 |
cacaaaccaagaaaaaccaaccaacgatgtaaactcaaatctaaaagcattctcagcagcactagcactctcatcaatcctcatctcatcaccactcccc |
10976063 |
T |
|
| Q |
101 |
gctgtcgccgacatctccggtctaacaccatgcagagaatcaaaacaattcgccaaacgtgagaaacaatcaatcaaaaagcttgaatcatccctcaagc |
200 |
Q |
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| T |
10976062 |
gctgtcgccgacatctccggcctaacaccatgcagagaatcaaaacaattcgccaaacgtgagaaacaatcaatcaaaaagcttgaatcatcactcaagc |
10975963 |
T |
|
| Q |
201 |
tttacgctccggacagtgctccagcgctggccataaaagcaacagttgagaaaaccaagagaaggtttgataactatggaaagcaaggtttgttgtgtgg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10975962 |
tttacgctccggacagcgctccagcgctggccataaaagcaacagttgagaaaaccaagagaaggtttgataactatggaaagcaaggtttgttgtgtgg |
10975863 |
T |
|
| Q |
301 |
tgctgatggtttaccgcatttgatagtgaatggtgatcaaagacattggggtgagtttatcacaccagggatattgtttttgtatattgctggttggatt |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10975862 |
tgctgatggtttaccacatttgatagtgaatggtgatcaaagacattggggtgagtttatcacaccagggatattgtttttgtatattgctggttggatt |
10975763 |
T |
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| Q |
401 |
ggatgggttggtaggagttatttgattgctattcgtgatgagaagaaacctactcagaaa |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10975762 |
ggatgggttggtaggagttatttgattgctattcgtgatgagaagaaacctactcagaaa |
10975703 |
T |
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