View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_high_6 (Length: 365)
Name: NF1598_high_6
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 170 - 349
Target Start/End: Complemental strand, 33188781 - 33188602
Alignment:
| Q |
170 |
tctagtatagtttcataaaatttcatgcatacccacaaaacccaattctacaaggaatcccacgtttacactttttgttacacttgccacaattattaac |
269 |
Q |
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| T |
33188781 |
tctagtatagtttcataaaatttcatgcatacccacaaaacccaattctacaaggaatcccacgtttacactttttgttacacttgccacaattattaac |
33188682 |
T |
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| Q |
270 |
attatacaatatgttagtacaaactccaccacaacaacgttctccttgcttacatttcttcccacattgaccacaatggt |
349 |
Q |
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| T |
33188681 |
attatacaatatgttagtacaaactccaccacaacaacgttctccttgcttacatttcttcccacattgaccacaatggt |
33188602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 33189501 - 33189330
Alignment:
| Q |
1 |
atattctatgagaaacaaaactcaaccaagaaaaaaggaccaagtacaca------ttcgaaattaagaaatttgaatgtcaaatattacactctttgaa |
94 |
Q |
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| T |
33189501 |
atattctatgagaaacaaaactcaaccaagaaaaaagaaccaagtacacagacacattcaaaattaagaaatttgaatgtcaaatattacactctttgaa |
33189402 |
T |
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| Q |
95 |
actcaagtaattataaagcaacaatttattcaaagaatccacccataatccaaaatgttgagcaaattctaa |
166 |
Q |
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| T |
33189401 |
actcaagtaattataaagcaacaatttattcaaagaatccaaccataatccaaaatgttgagcaaattctaa |
33189330 |
T |
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