View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1598_low_1 (Length: 951)
Name: NF1598_low_1
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 865; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 865; E-Value: 0
Query Start/End: Original strand, 18 - 906
Target Start/End: Complemental strand, 49510089 - 49509201
Alignment:
| Q |
18 |
catgtttcgtgaatatgatattgctcgtgtatcgaatgttgccacggcaaatcaaaacaatacatggaatgttcagttgtttagatcgatcgatgctggt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49510089 |
catgtttcgtgaatatgatattgctcgtgtatcgaatgttgccacggcaaatcaaaacaatacatggaatgttcagttgtttagatcaatcgatgctggt |
49509990 |
T |
|
| Q |
118 |
gctgcttctggcttccctcaagatccaacagaagccgctgaaaaaggtcttgttactggaaaagataacatcattgatagaagcattcaagatgcctaca |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509989 |
gctgcttctggcttccctcaagatccaacagaagccgccgaaaaaggtcttgttactggaaaagataacatcattgatagaagcattcaagatgcctaca |
49509890 |
T |
|
| Q |
218 |
taaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttcatatggttggaaatcgtctgatattaaagttgagga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509889 |
taaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttcatatggttggaaatcgtctgatattaaagttgagga |
49509790 |
T |
|
| Q |
318 |
tattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagctggagagagattgtctgtgtacattgtcattccaatg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49509789 |
tattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagctggagagagattttctgtgtacattgtcattccaatg |
49509690 |
T |
|
| Q |
418 |
tggccagaaggtatacctgaaagtgcttcagttcaagcaatattagattggcaaagaaggactatggagatgatgtattctgacattgctgaagcccttc |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509689 |
tggccagaaggtatacctgaaagtgcttcagttcaagcaatattagattggcaaagaaggactatggagatgatgtattctgacattgctgaagcccttc |
49509590 |
T |
|
| Q |
518 |
aaagaaaggggatcagagccaacccaagagattacttgtcattttattgccttggaaaccgagagggtaagaaaatgaatgaatatacttctacagaagc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49509589 |
aaagaaaggggatcagagccaacccaagagattacttgtcattttattgccttggaaaccgagagggtaagaaaatgaatgaatatacttctacagaagc |
49509490 |
T |
|
| Q |
618 |
accagaacctgacagtgattatagtagagcacaaaattctataagattcatgatatatgttcatgccaaaatgatgataggtaagggatccaacatatat |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49509489 |
accagaacctgacagtgattatagtagagcacaaaattctagaagattcatgatatatgttcatgccaaaatgatgataggtaagggatccaacataaat |
49509390 |
T |
|
| Q |
718 |
atcatctgtttctatttacatttattagtgacactgctaactattttacaactgttcccgaagatatttgaacttacttcgttcattgagattacatgat |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49509389 |
atcatctgtttctatttacatttattagtgacactgctaactattttacaactgttcccgaagatatttgaacttacttcgttcattgagattacatgat |
49509290 |
T |
|
| Q |
818 |
caaattcttaccattgaattgacactttccaattaattagcacatacgcctttgcaaaagaaaatttattaacacgttcttgtgattta |
906 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49509289 |
caaattcttaccattgaattgacactttccaattaattagcacatacgcctttgcaaaagaaaatttattaacacattcttgtgattta |
49509201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 82 - 702
Target Start/End: Complemental strand, 49521171 - 49520551
Alignment:
| Q |
82 |
tggaatgttcagttgtttagatcgatcgatgctggtgctgcttctggcttccctcaagatccaacagaagccgctgaaaaaggtcttgttactggaaaag |
181 |
Q |
| |
|
|||| |||||||||||||||||| || |||| |||||||| |||| ||||||||||| |||| |||| ||| ||| ||||||| |||||||| |
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| T |
49521171 |
tggagtgttcagttgtttagatccattgatggtggtgctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagtggaaaag |
49521072 |
T |
|
| Q |
182 |
ataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttc |
281 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||| ||||| ||| |||| || || |||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
49521071 |
acaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttc |
49520972 |
T |
|
| Q |
282 |
atatggttggaaatcgtctgatattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagct |
381 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||| ||||||| |||||||| |
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|
| T |
49520971 |
ctatggttggcattcaactgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaagatcattagcaaaattgaagcc |
49520872 |
T |
|
| Q |
382 |
ggagagagatt-gtctgtgtacattgtcattccaatgtggccagaaggtatacctgaaagtgcttcagttcaagcaatattagattggcaaagaaggact |
480 |
Q |
| |
|
|||||||| || ||| ||||| | || ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
49520871 |
ggagagaggtttgtc-gtgtatgtggtgattccaatgtggccagaaggtatacctgagagtgcatcagttcaggcaatattagattggcaaagaaggacc |
49520773 |
T |
|
| Q |
481 |
atggagatgatgtattctgacattgctgaagcccttcaaagaaaggggatcagagccaacccaagagattacttgtcattttattgccttggaaaccgag |
580 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||| | ||| ||| || ||| |||| | ||||| ||| |||||||||| ||||| || | | |
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| T |
49520772 |
atggagatgatgtatactgagattgctgatgccataaaaaagaagaacattgaagcacaccctcgtgattatttgacattttattgtcttggtaaaaggg |
49520673 |
T |
|
| Q |
581 |
agggtaagaaa-atgaatgaatatacttctacagaagcaccagaacctgacagtgattatagtagagcacaaaattctataagattcatgatatatgttc |
679 |
Q |
| |
|
|| |||||||| ||| | || || ||| || |||| | ||||| ||||||||||||||| |||||||||||| |||| |||||||||||| ||||||| |
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| T |
49520672 |
agagtaagaaagatgga-gagtacactcctccagaggaaccagcgcctgacagtgattatcatagagcacaaaagtctagaagattcatgatctatgttc |
49520574 |
T |
|
| Q |
680 |
atgccaaaatgatgataggtaag |
702 |
Q |
| |
|
|| |||| ||||||||||||||| |
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|
| T |
49520573 |
attccaagatgatgataggtaag |
49520551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 181 - 494
Target Start/End: Original strand, 44662641 - 44662954
Alignment:
| Q |
181 |
gataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagtt |
280 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| || || || ||||||||||| || |||||||||||||||||||||||||| ||||| || || |||| |
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|
| T |
44662641 |
gataacataatagataggagtattcaagatgcttatatcaatgctattcgacgcgcaaagaatttcatctacattgaaaatcaatatttccttggaagtt |
44662740 |
T |
|
| Q |
281 |
catatggttggaaatcgtctgatattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaagattgaagc |
380 |
Q |
| |
|
|||| |||| | || |||||| ||| || |||||||||||||| || || ||||||||| | || || ||||||||||||||||||||||| |
|
|
| T |
44662741 |
gctatgcgtggagtgctgatggtattaagcctgaagacattggtgctttgcatctgatcccaaaagagctttcacttaagattgttagcaagattgaagc |
44662840 |
T |
|
| Q |
381 |
tggagagagattgtctgtgtacattgtcattccaatgtggccagaaggtatacctgaaagtgcttcagttcaagcaatattagattggcaaagaaggact |
480 |
Q |
| |
|
||| || ||||| ||||||| |||| |||| |||||||| || ||| | || |||||| | |||||||| ||||||||||| ||||| || || || |
|
|
| T |
44662841 |
tggggaaagattcactgtgtatgttgtggttcccatgtggcctgagggtgtcccagaaagttcatcagttcaggcaatattagactggcagaggagaaca |
44662940 |
T |
|
| Q |
481 |
atggagatgatgta |
494 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
44662941 |
atggatatgatgta |
44662954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 664 - 702
Target Start/End: Original strand, 44663124 - 44663162
Alignment:
| Q |
664 |
ttcatgatatatgttcatgccaaaatgatgataggtaag |
702 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
44663124 |
ttcatgatctatgttcatgccaagatgatgataggtaag |
44663162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 174 - 494
Target Start/End: Complemental strand, 2416424 - 2416104
Alignment:
| Q |
174 |
tggaaaagataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttcta |
273 |
Q |
| |
|
|||||| ||||| ||||| ||| | |||||||||||||| || || || |||||||| || || ||||| |||||||| ||||||||||||||||| || |
|
|
| T |
2416424 |
tggaaaggataatatcatcgatcgtagcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtatttcctt |
2416325 |
T |
|
| Q |
274 |
ggtagttcatatggttggaaatcgt-ctgatattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagcaag |
372 |
Q |
| |
|
|| || || | || |||| | | || |||||||| ||| || |||||||||||||| || || ||||| || | || || |||||| | || ||| |
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|
| T |
2416324 |
ggaagctcttttgcttgg-agtggtgaggatattaagcctgaagacattggtgctttgcatctaatcccaaaggaactttcacttaagattatgagtaag |
2416226 |
T |
|
| Q |
373 |
attgaagctggagagagattgtctgtgtacattgtcattccaatgtggccagaaggtatacctgaaagtgcttcagttcaagcaatattagattggcaaa |
472 |
Q |
| |
|
||||||||||| || | || |||||||| |||| | ||||||||||| || ||| | || |||||||| || |||||||||||||| || ||||| | |
|
|
| T |
2416225 |
attgaagctggggaaaagttcactgtgtacgttgttgtcccaatgtggccggagggtgtcccagaaagtgcatcggttcaagcaatattggactggcaga |
2416126 |
T |
|
| Q |
473 |
gaaggactatggagatgatgta |
494 |
Q |
| |
|
| || || |||||||||||||| |
|
|
| T |
2416125 |
ggagaacaatggagatgatgta |
2416104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 664 - 702
Target Start/End: Complemental strand, 2415934 - 2415896
Alignment:
| Q |
664 |
ttcatgatatatgttcatgccaaaatgatgataggtaag |
702 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
2415934 |
ttcatgatatatgttcataccaagatgatgataggtaag |
2415896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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