View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_low_10 (Length: 314)
Name: NF1598_low_10
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 9822112 - 9822399
Alignment:
| Q |
19 |
ttactctgtgaatcatgatattgcggtcatggttactccttgaatcatgatattgtggcaaattgtggccgatgagaccgaagctgcaatgctgttgagt |
118 |
Q |
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| T |
9822112 |
ttactctgtgaatcatgatattgcggtcatggttactccttgaatcatgatattgtggcaaattgtggccgatgagaccgaagctgcaatgctattgagt |
9822211 |
T |
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| Q |
119 |
agatatctaaaacttttaatattgctgttgctgattgcaatttagaaccattgcctgaatgttgaatataaatcactataacaccgacacttcagatgga |
218 |
Q |
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| T |
9822212 |
agatatctaaaacttttaatattgctgttgctgattgcaatttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatgga |
9822311 |
T |
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| Q |
219 |
actggcaggacatggacatatgtgatacattcgattaattcattttttcaaattttaacatgtcagtgtcgggcctggtgtctgtgct |
306 |
Q |
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| T |
9822312 |
actggcaggacatggacatatgtgatacattcgattaattcattttttcaaattttaacatgtcagtgtcgggcctggtgtctgtgct |
9822399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 6275373 - 6275091
Alignment:
| Q |
18 |
gttactctgtgaatcatgatattgcggtcatggttactccttgaatcatgatattgtggcaaattgtggccgatgagaccgaagctgcaatgctgttgag |
117 |
Q |
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| T |
6275373 |
gttactctgtgaatcatgatattgcggtcatggttactccttgaatcatgatattgtggcaaattgtggccgatgagaccgaagctgcaatgctgttgag |
6275274 |
T |
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| Q |
118 |
tagatatctaaaacttttaatattgctgttgctgattgcaatttagaaccattgcctgaatgttgaatataaatcactataacaccgacacttcagatgg |
217 |
Q |
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| T |
6275273 |
tagatatctaaaacttttaatattgctgttgctgattgcaatttagaaccattgcctgaatgttgaatataaatcactgtaacaccgacacttcagatgg |
6275174 |
T |
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| Q |
218 |
aactggcaggacatggacatatgtgatacattcgattaattcattttttcaaattttaacatgtcagtgtcgggcctggtgtctgtgct |
306 |
Q |
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| T |
6275173 |
aactggcaggacatgg------gtgatacattcgattaattcattttttcaaattttaacatgtcagtgtcgggcctggtgtctgtgct |
6275091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 9822890 - 9823007
Alignment:
| Q |
160 |
ttagaaccattgcctgaatgttgaatataaatcactataacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
259 |
Q |
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| T |
9822890 |
ttagaatcattgcttgaatattgaatagaaaccattgtagcaccgacacttctaatggaaccggcaggacacagccatatgtgatacattcaattaattc |
9822989 |
T |
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| Q |
260 |
attttttcaaattttaac |
277 |
Q |
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| T |
9822990 |
attttttcaagttttaac |
9823007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 6273963 - 6273846
Alignment:
| Q |
160 |
ttagaaccattgcctgaatgttgaatataaatcactataacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
259 |
Q |
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| T |
6273963 |
ttagaatcatcgcttgaatattgaatagaaaccattttagcaccgacacttctaatggaaccggcaggacacaaccatatgtgatacattcaattaattc |
6273864 |
T |
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| Q |
260 |
attttttcaaattttaac |
277 |
Q |
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| T |
6273863 |
attttttcaagttttaac |
6273846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 6274605 - 6274488
Alignment:
| Q |
160 |
ttagaaccattgcctgaatgttgaatataaatcactataacaccgacacttcagatggaactggcaggacatggacatatgtgatacattcgattaattc |
259 |
Q |
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|||||| ||| || ||||| ||||||| ||| || |||| |||||||||||| ||||||| ||||||||| |||||| ||||||||| |||||||| |
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| T |
6274605 |
ttagaatcatcgcttgaatattgaatagaaaccattatagcaccgacacttctaatggaaccggcaggacacaaccatatgcgatacattcaattaattc |
6274506 |
T |
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| Q |
260 |
attttttcaaattttaac |
277 |
Q |
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| T |
6274505 |
attttttcaagttttaac |
6274488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 35679113 - 35679287
Alignment:
| Q |
38 |
attgcggtcatggttactccttgaatcatgatattgtggcaaattgtggccgatgagaccgaagctgcaatgctgttgagtagatatctaaaacttttaa |
137 |
Q |
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| T |
35679113 |
attgcggtcacggttaccctttgaatcatgatattgcggcaaattgtggcagatgagactgtagttacaatgccgttgagtagatatctaaaaaattt-a |
35679211 |
T |
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| Q |
138 |
tattgctgttgctgattgcaatttagaaccattgcctgaa---tgttgaatataaatcactataacaccgacactt |
210 |
Q |
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||||||||||| |||||||||||||||||||| || |||| ||||||||| ||||||||||| ||||||||||| |
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| T |
35679212 |
tattgctgttgttgattgcaatttagaaccatagcttgaatgttgttgaatagaaatcactatagcaccgacactt |
35679287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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