View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_low_11 (Length: 263)
Name: NF1598_low_11
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 32496428 - 32496690
Alignment:
| Q |
12 |
atgaatgatacaacacaacttctattcctcttttggttgacacattgctctgatgttgttggaaaaacaatcggaaaaaatatctacaaagtggaagtac |
111 |
Q |
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| T |
32496428 |
atgaatgatacaacacaacttctattcctcttttggttgacacattgctctgatgttgttggaaaaacaatcgaaaaaaatatctacaaagtggaagtac |
32496527 |
T |
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| Q |
112 |
aacgacaaaaataa------------ctaacgagattgtggtttggaacttcatacctacatccataatctcacgataaaatatttattaatgaatctac |
199 |
Q |
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| T |
32496528 |
aacgaccaaaaaaaagacaaaaatggctaacgagattgtggtttggaacttcatacctacatccataatctcacgataaaatatttattaatgaatctac |
32496627 |
T |
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| Q |
200 |
aatattttatatgaaaaatggcaaacctctttatacatttttatggacaaaattgcaaattct |
262 |
Q |
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| T |
32496628 |
aatattttatatgaaaaatggcaaacctctttatacatttttatggacaaaattgcaaattct |
32496690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 32495705 - 32495776
Alignment:
| Q |
115 |
gacaaaaataactaacgagattgtggtttggaacttc--atacctacatccataatctcacgataaaatattt |
185 |
Q |
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| T |
32495705 |
gacaaaaataactcacaagattgtggtttgg-atttcatatacctacatccataatctctcaacaaaatattt |
32495776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 5828740 - 5828687
Alignment:
| Q |
118 |
aaaaataactaacgagattgtggtttggaacttcatacctacatccataatctc |
171 |
Q |
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| T |
5828740 |
aaaaaaaactcacaagattgtggttcggcacttcatacctacatccacaatctc |
5828687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 25287888 - 25287832
Alignment:
| Q |
115 |
gacaaaaataactaacgagattgtggtttggaacttcatacctacatccataatctc |
171 |
Q |
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| T |
25287888 |
gacaaaaataactcacaagattgtggttcgacacttcatacctacattcacaatctc |
25287832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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