View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1598_low_12 (Length: 255)

Name: NF1598_low_12
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1598_low_12
NF1598_low_12
[»] chr1 (3 HSPs)
chr1 (89-247)||(49978573-49978731)
chr1 (60-90)||(49978527-49978557)
chr1 (19-48)||(49978474-49978503)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 89 - 247
Target Start/End: Original strand, 49978573 - 49978731
Alignment:
Q  89 tatacaaaatatacagtgtttgatttgatagaatttgtgaaattgatattcagatgttatccaccaatagcaacagcagggtatcatccagcaggtaaca 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49978573 tatacaaaatatacagtgtttgatttgatagaatttgtgaaattgatattcagatgttatccaccaatagcaacagcagggtatcatccagcaggtaaca 49978672  T
Q  189 taggagatcatcatcatcacccaacaatgccattgagtttcccaacatccttctctgct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49978673 taggagatcatcatcatcacccaacaatgccattgagtttcccaacatccttctctgct 49978731  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 49978527 - 49978557
Alignment:
Q  60 ttgttgtttttccattagaataatacagtta 90  Q
    |||||||||||||||||||||||||||||||    
T  49978527 ttgttgtttttccattagaataatacagtta 49978557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 49978474 - 49978503
Alignment:
Q  19 aatcctatttccaaattataaacttctttt 48  Q
    ||||||||||||||||||||||||||||||    
T  49978474 aatcctatttccaaattataaacttctttt 49978503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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