View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_low_17 (Length: 232)
Name: NF1598_low_17
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 47264482 - 47264677
Alignment:
| Q |
17 |
cacagacttcaggtttacgtacacaagtcatttttattaactcacacaacacttattttctcatatcatatcatgacttcagcaccattattgttcacag |
116 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47264482 |
cacagacttcaggtttacgtacacaagtcattt--attaactcacacaacacttattttctcatatcatatcatgacttcagcaccattattgttcacag |
47264579 |
T |
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| Q |
117 |
tgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgatcaagaaggcttacgtttc |
214 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47264580 |
tgcggaggagccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgaccaagaaggcttacgtttc |
47264677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 47275115 - 47275245
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47275115 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatc |
47275214 |
T |
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| Q |
184 |
tgacatagatgatcaagaaggcttacgtttc |
214 |
Q |
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||||||||||||||||||| |||| |||||| |
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| T |
47275215 |
tgacatagatgatcaagaatgcttgcgtttc |
47275245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 47240681 - 47240801
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
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| T |
47240681 |
atatcatgacttcatcatcgttaatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatc |
47240780 |
T |
|
| Q |
184 |
tgacatagatgatcaagaagg |
204 |
Q |
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||||||||||||||||||||| |
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| T |
47240781 |
tgacatagatgatcaagaagg |
47240801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 47301234 - 47301114
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |||||||||||||| || |
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| T |
47301234 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactccttgtgaagttaaactattatc |
47301135 |
T |
|
| Q |
184 |
tgacatagatgatcaagaagg |
204 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
47301134 |
tgacatagatgatcaagaagg |
47301114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 47281862 - 47281971
Alignment:
| Q |
93 |
cttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacataga |
192 |
Q |
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|
||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47281862 |
cttcatcaccattattgttgacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgcgaagttaaactattatctgacataga |
47281961 |
T |
|
| Q |
193 |
tgatcaagaa |
202 |
Q |
| |
|
|||||||||| |
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|
| T |
47281962 |
tgatcaagaa |
47281971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 47296642 - 47296522
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
| |
|
|||||||||||||| || | ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
47296642 |
atatcatgacttcatcatcgttaatgttcacagtgcggaggtgccaaccagagttggtgccaccagctgcacccactcctcgtgaagttaaactattatc |
47296543 |
T |
|
| Q |
184 |
tgacatagatgatcaagaagg |
204 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
47296542 |
tgacatagatgatcaagaagg |
47296522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 47255512 - 47255633
Alignment:
| Q |
93 |
cttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacataga |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||| ||||||||||| | |||||||| || |
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| T |
47255512 |
cttcatcaccattattgttcacagtgcggaggtcccaaccagagttggtacttccagctgcacccactcctcatgaagttaaactcctctctgacattga |
47255611 |
T |
|
| Q |
193 |
tgatcaagaaggcttacgtttc |
214 |
Q |
| |
|
||||||||||||| | |||||| |
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| T |
47255612 |
tgatcaagaaggccttcgtttc |
47255633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 32729216 - 32729346
Alignment:
| Q |
84 |
atatcatgacttcagcaccattattgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtc |
183 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
32729216 |
atatcatgacttcatcaccattgttgttcacagtgcggaggtgccaaccagagttggtgccaccagttgcacccactcctcgcgaagttaaactattatc |
32729315 |
T |
|
| Q |
184 |
tgacatagatgatcaagaaggcttacgtttc |
214 |
Q |
| |
|
||| ||||||||||||||||| || |||||| |
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| T |
32729316 |
tgatatagatgatcaagaaggtttgcgtttc |
32729346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 20511577 - 20511668
Alignment:
| Q |
108 |
tgttcacagtgcggaggagccaaccagtgttggtgccaccagctgcacccactcctcgcgaagttaaactattgtctgacatagatgatcaa |
199 |
Q |
| |
|
||||||| ||||| ||| |||||||| | |||| || |||||||||||||||||||| ||| ||||| || | |||||||||||||||||| |
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| T |
20511577 |
tgttcactgtgcgaaggtgccaaccacagctggtacctccagctgcacccactcctcgtgaatttaaaatactatctgacatagatgatcaa |
20511668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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