View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_low_18 (Length: 229)
Name: NF1598_low_18
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 36292984 - 36293196
Alignment:
| Q |
1 |
ggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctgacagaccctgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36292984 |
ggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctgacagaccctgcca |
36293083 |
T |
|
| Q |
101 |
aaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgtcaatccaaaggt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293084 |
aaggagttgacggagtttttgaaaaggcatacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgtcaatccaaaggt |
36293183 |
T |
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| Q |
201 |
attttcataattc |
213 |
Q |
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||||||||||||| |
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| T |
36293184 |
attttcataattc |
36293196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 36281496 - 36281695
Alignment:
| Q |
1 |
ggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctgacagaccctgcca |
100 |
Q |
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||||||||||||||||| ||||||||| || | |||||||||| |||||||||||| || | ||||||||||||||||||||| ||||||||||||||| |
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| T |
36281496 |
ggctataaacttttagtgactatgccagctactatgagtcttgaaagaaaaattatactgcgagctttcggagccgaggtatatttgacagaccctgcca |
36281595 |
T |
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| Q |
101 |
aaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgtcaatccaaaggt |
200 |
Q |
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| T |
36281596 |
aaggaattgatggtgtttttcagaaagcagacgagctattagcgaagacgcctaatagttataagctcaatcagtttgaaaactctgccaatccaaaggt |
36281695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 36287435 - 36287642
Alignment:
| Q |
1 |
ggctataaacttttagtaactatgccatcttttgtgagtcttgagagaaaaattatattgtgcgctttcggagccgaggtatatctgacagaccctgcca |
100 |
Q |
| |
|
||||||||||||||||| | |||||| || ||||||||||||||||| |||| || | | ||||| ||||| ||||||||||| ||||| ||||||| |
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| T |
36287435 |
ggctataaacttttagtgtcattgccattttatgtgagtcttgagagaagaattctactcagagcttttggagctgaggtatatctaacagatcctgcca |
36287534 |
T |
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| Q |
101 |
aaggagttgacggagtttttgaaaaggcagacgagctattagcaaagacacctaatagttatatgctcaatcaatttgaaaatcctgtcaatccaaaggt |
200 |
Q |
| |
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||||| | || || |||||||| || || || |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||| ||||| |
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| T |
36287535 |
aaggaatagatggtgtttttgagaaagcggaagagctattagagaagacgcctaatagttatatgttcaatcaatttgaaaatcctgccaatccgaaggt |
36287634 |
T |
|
| Q |
201 |
attttcat |
208 |
Q |
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||| |||| |
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| T |
36287635 |
attgtcat |
36287642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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