View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_low_4 (Length: 431)
Name: NF1598_low_4
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 46927496 - 46927891
Alignment:
| Q |
13 |
attattctaaaagattcacaagttctagttaatatatggactatttgtagggatgctaacttgtgggagaatccaacattgttctctccagaaaggtttt |
112 |
Q |
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| T |
46927496 |
attattccaaaagattcacaagtactagttaatgtatggactatttgtagggatgctaacttgtgggagaatccaacattgttctctccagaaaggtttt |
46927595 |
T |
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| Q |
113 |
tagggtctgatattgatattgatgtcaaaggaaggaattatgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaatag |
212 |
Q |
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| T |
46927596 |
tagggtctgat------attgatgtcaaaggaaggaattttgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaatag |
46927689 |
T |
|
| Q |
213 |
gatgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatttgga |
312 |
Q |
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| T |
46927690 |
gatgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatttgga |
46927789 |
T |
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| Q |
313 |
cttactcttcaaaaagccaaaccccttcgaattcttcctctccctccaattaattaaccaagggtatcatgttatacttatttagccacctttggataaa |
412 |
Q |
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| T |
46927790 |
cttactcttcaaaaagccaaaccccttcgaattcttcctctccctccaattaattaactaagggtatcatgttatacttatttagccacctttggattaa |
46927889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 15 - 354
Target Start/End: Complemental strand, 11106574 - 11106241
Alignment:
| Q |
15 |
tattctaaaagattcacaagttctagttaatatatggactatttgtagggatgctaacttgtgggagaatccaacattgttctctccagaaaggttttta |
114 |
Q |
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| T |
11106574 |
tattccaaaagatgcacaagtgctagttaatatgtggacaatttgtaaggatccaacattgtgggagaatccaactttgttctctccagaaaggtttatg |
11106475 |
T |
|
| Q |
115 |
gggtctgatattgatattgatgtcaaaggaaggaattatgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaatagga |
214 |
Q |
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| T |
11106474 |
ggatcggatattgat------gtgaaaggaaggaattatgaggttgctccatttggtggtgggaggagaatttgtccaggtttgcaattggctaatagga |
11106381 |
T |
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| Q |
215 |
tgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatttggact |
314 |
Q |
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| T |
11106380 |
tgttaatgttaatgttgggttcactgattaactcatttgattgggagcttgaaggtggcatgaaaccagaagatatgaacatggatgataaatttgggat |
11106281 |
T |
|
| Q |
315 |
tactcttcaaaaagccaaaccccttcgaattcttcctctc |
354 |
Q |
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| T |
11106280 |
tactctacaaaaggctcaaccccttcgaattgttcctctc |
11106241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 11112912 - 11113205
Alignment:
| Q |
15 |
tattctaaaagattcacaagttctagttaatatatggactatttgtagggatgctaacttgtgggagaatccaacattgttctctccagaaaggttttta |
114 |
Q |
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||||| ||||||| ||||||| ||||||||||| ||||| ||||||| |||| | | ||||||||||||||||| ||||||||||||||||||||| | |
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| T |
11112912 |
tattccaaaagatgcacaagtgctagttaatatgtggacaatttgtaaggatccaacattgtgggagaatccaactttgttctctccagaaaggtttatg |
11113011 |
T |
|
| Q |
115 |
gggtctgatattgatattgatgtcaaaggaaggaattatgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaatagga |
214 |
Q |
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| T |
11113012 |
ggatcggatattgat------gtgaaaggaaggaattatgaggttgctccatt-ggtggtgggaggaga-tttgtccag--ttgcaatgg--taatagga |
11113099 |
T |
|
| Q |
215 |
tgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatttggact |
314 |
Q |
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||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |
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| T |
11113100 |
tgttaatgttaatgttgggttcactgattaactcatttgattgggagcttgaaggtggcatgaaaccagaagatatgaacatggatgataaatttgggat |
11113199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 130 - 308
Target Start/End: Original strand, 46934477 - 46934655
Alignment:
| Q |
130 |
attgatgtcaaaggaaggaattatgagcttgtgccattcggtggtggtaggagaatttgtcctggtttgcaattggctaataggatgttattgttaatgt |
229 |
Q |
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|||||||||||||| |||||| ||||||||| ||||| |||| ||| | |||| || ||||| || |||||||||||||||||| | ||||||||| |
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| T |
46934477 |
attgatgtcaaaggccggaattttgagcttgtaccatttggtgctggacgacgaatatgccctggcttacaattggctaataggatgctgctgttaatgt |
46934576 |
T |
|
| Q |
230 |
tgggttcattagttaactcttttgattgggagcttgaaggtggcatgaaaccagaagatatggatatggatgataaatt |
308 |
Q |
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| T |
46934577 |
tggggtcgttagtcaactcgtttgattggaagcttgaaggtgacatgaaaccagaagatatggacatgaatgataaatt |
46934655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 318
Target Start/End: Complemental strand, 13789708 - 13789559
Alignment:
| Q |
169 |
ggtggtggtaggagaatttgtcctggtttgcaattggctaataggatgttattgttaatgttgggttcattagttaactcttttgattgggagcttgaag |
268 |
Q |
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| T |
13789708 |
ggtggtgggagaagaatttgtcctggtttaccattggctattagggttttgtttttgatgttgggtttgtttattaattgttttgattgggaacttgtcg |
13789609 |
T |
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| Q |
269 |
gtggcatgaaaccagaagatatggatatggatgataaatttggacttact |
318 |
Q |
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| T |
13789608 |
gtggaattaaacctgaggatatgaatatggatgataaatttgaacttact |
13789559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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