View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1598_low_5 (Length: 394)
Name: NF1598_low_5
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 9822498 - 9822874
Alignment:
| Q |
10 |
ctgttacaaagtgtgtataatttttactctggaactcttagcaatgaacatgggattt-gttcaaaatacgttaacttctctgcatttggtatgattcag |
108 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
9822498 |
ctgttacaacgcatgtataattttttctctggaactcttagcaatgaacatgggattttgttcaaaataagttcacttctctgcatttggtatgattcag |
9822597 |
T |
|
| Q |
109 |
tcatttccacattagctcagagttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacggctaattatctgt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9822598 |
tcatttccacattagctcagagttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacggcgaattatctgt |
9822697 |
T |
|
| Q |
209 |
ttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatcgatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9822698 |
ttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatcctgttatcgatt |
9822797 |
T |
|
| Q |
309 |
aggtcaa-----aatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttcatct |
380 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9822798 |
aggtcaagaaacgatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttcatct |
9822874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 6274992 - 6274621
Alignment:
| Q |
10 |
ctgttacaaagtgtgtataatttttactctggaactcttagcaatgaacatgggattt-gttcaaaatacgttaacttctctgcatttggtatgattcag |
108 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
6274992 |
ctgttacaaagcatgtataattttttctctggaacccttagcaatgaacatgggattttgttcaaaataagtgcacttctctgcatttggtatgattcag |
6274893 |
T |
|
| Q |
109 |
tcatttccacattagctcagagttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacggctaattatctgt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6274892 |
tcatttccacattagctcagagttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacgactaattatctgt |
6274793 |
T |
|
| Q |
209 |
ttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatcgatt |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
6274792 |
ttaagactttaagcttttgtgcatgctaatggcttgtttctgggataacggggacatgattctgacacctgaacttgtttcttttatcctgttatcgatt |
6274693 |
T |
|
| Q |
309 |
aggtcaaaatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttcatct |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6274692 |
aggtcaaaatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttcatct |
6274621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 9823140 - 9823508
Alignment:
| Q |
10 |
ctgttacaaagtgtgtataatttttactctggaactcttagcaatgaacatgggattt-gttcaaaatac-gttaacttctctgcatttggtatgattca |
107 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||| ||||||| || ||| | ||||||||||||||||||||||| |
|
|
| T |
9823140 |
ctgttacaaagcatgtataaatttttctctggaactcttggcaatgaacatgggattttgttcaaactaaagttcatttctctgcatttggtatgattca |
9823239 |
T |
|
| Q |
108 |
gtcatttccacattagctcaga-gttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacggctaattatct |
206 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||| |
|
|
| T |
9823240 |
gtcatttctacattagctcagaagttatgaatttcagagacattatattgttttacactttataaaatggcttacgagttgtgaagacggctaattatct |
9823339 |
T |
|
| Q |
207 |
gtttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatcga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| | |
|
|
| T |
9823340 |
ttttaagaccttaagcttttgtgcatgctaatgacttgtttctgggataatggggaaatgattctgatatctg-----ttttcttttatcctgttatcaa |
9823434 |
T |
|
| Q |
307 |
ttaggtcaaaatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttcatct |
380 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
9823435 |
ttagatcaagatagaccatttacctttaaatttctctcaatggtttgacccgtagttttcttttgtctttatct |
9823508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 6273708 - 6273338
Alignment:
| Q |
10 |
ctgttacaaagtgtgtataatttttactctggaactcttagcaatgaacatgggattt-gttcaaaatac-gttaacttctctgcatttggtatgattca |
107 |
Q |
| |
|
||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||| ||||||| || ||| | ||||||||||||||||||||||| |
|
|
| T |
6273708 |
ctgttacaaagcttgtataaatttttctctagaactcttagcaatgaacatgggattttgttcaaactaaagttcatttctctgcatttggtatgattca |
6273609 |
T |
|
| Q |
108 |
gtcatttccacattagctcaga-gttatgaatttgagagacattatat----tgttttacgttttataaaatggcttgcgagctgtgaatacggctaatt |
202 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||| ||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
6273608 |
gtcatttctacattagctcagaagttat--atttcagagacattatatatattgttttacactttataaaatggcttatgagttgtgaatacggataatt |
6273511 |
T |
|
| Q |
203 |
atctgtttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatcctttta |
302 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
6273510 |
atctttttaagaccttaagcttttgtgcatgctaatgacttgtttctgggataacggggaaatgattctgatatctg-----ttttcttttatcctgtta |
6273416 |
T |
|
| Q |
303 |
tcgattaggtcaaaatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttcatct |
380 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
6273415 |
tcaattaggtcaagatagaccatttacctttaaatttctctcaatggtttgatccgtagttttcttttggctttatct |
6273338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 380
Target Start/End: Complemental strand, 6274350 - 6273979
Alignment:
| Q |
10 |
ctgttacaaagtgtgtataatttttactctggaactcttagcaatgaacatgggattt-gttcaaaatac-gttaacttctctgcatttggtatgattca |
107 |
Q |
| |
|
||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||| ||||||| || ||| | |||||||||||||||||||||| |
|
|
| T |
6274350 |
ctgttacaaagcttgtataaatttttctctagaactcttagcaatgaacatgggattttgttcaaactaaagttcatttctctgcatttggtatgattct |
6274251 |
T |
|
| Q |
108 |
gtcatttccacattagctcaga-gttatgaatttgagagacattatat----tgttttacgttttataaaatggcttgcgagctgtgaatacggctaatt |
202 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||| ||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
6274250 |
gtcatttctacattagctcagaagttat--atttcagagacattatatatattgttttacactttataaaatggcttatgagttgtgaatacggataatt |
6274153 |
T |
|
| Q |
203 |
atctgtttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatcctttta |
302 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
6274152 |
atctttttaagaccttaagcttttgtgcatgctaatgacttgtttctgggataaccaggaaatgattctgatatctg-----ttttcttttatcctgtta |
6274058 |
T |
|
| Q |
303 |
tcgattaggtcaaaatagaccatttacctttaaatttctctcaatgg-tttgatccgtagttttattttgtcttcatct |
380 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
6274057 |
tcaattaggtcaagatagaccatttacctttaaatttctctcaatggttttgctccgtagttttattttgtcttcatct |
6273979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 26 - 341
Target Start/End: Original strand, 35679597 - 35679917
Alignment:
| Q |
26 |
ataatttttactctggaactcttagcaatgaacatgggattt-gttcaaaatacgttaacttctctgcatttggtatgattcagtcatttccacattagc |
124 |
Q |
| |
|
|||| |||| || ||||||||| ||||||||||||||||||| ||||||| || ||| | |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
35679597 |
ataaatttttctatggaactctaagcaatgaacatgggattttgttcaaactaagttcatttctctgcatttcgtatgattcagtcatttctacattagc |
35679696 |
T |
|
| Q |
125 |
tcaga-gttatgaatttgagagacattatattgttttacgttttataaaatggcttg--cgagctgtgaatacggctaattatctgtttaagaccttaag |
221 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||| |||||||||||||||| |
|
|
| T |
35679697 |
tcagacgttatgaatttcagagacattatattgttttacactttataaaatggcttttacgagtggtgaatttggctaattatatgtttaagaccttaag |
35679796 |
T |
|
| Q |
222 |
cttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatcgattagg-tcaaaatag |
320 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||| ||||| |||||| |||| |||| |
|
|
| T |
35679797 |
cttttgtgcatgctaatggcatgtttctgggataacagggaaaatattctaatatctgaacgtgtttcttttatcctgttatctattaggatcaagatag |
35679896 |
T |
|
| Q |
321 |
accatttacctttaaatttct |
341 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35679897 |
accatttacctttaaatttct |
35679917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 35679496 - 35679545
Alignment:
| Q |
10 |
ctgttacaaagtgtgtataatttttactctggaactcttagcaatgaaca |
59 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
35679496 |
ctgttacaaagcatgtataaatttttctctggaactcttagcaatgaaca |
35679545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 25486820 - 25486787
Alignment:
| Q |
321 |
accatttacctttaaatttctctcaatggtttga |
354 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
25486820 |
accatttacctttaaatttctctcattggtttga |
25486787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University