View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1598_low_6 (Length: 383)
Name: NF1598_low_6
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1598_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 54182823 - 54182775
Alignment:
| Q |
312 |
cttcacaaataactcttgattacaaagaaaaatcattaaatcagagaaa |
360 |
Q |
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| T |
54182823 |
cttcacagataactcttgattacaaagaaaaatcattaaatcagagaaa |
54182775 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 2334441 - 2334485
Alignment:
| Q |
321 |
taactcttgattacaaagaaaaatcattaaatcagagaaagtttt |
365 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2334441 |
taactcttgattacaaagaaaaaacattaaatcagagaaagtttt |
2334485 |
T |
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