View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1598_low_9 (Length: 320)

Name: NF1598_low_9
Description: NF1598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1598_low_9
NF1598_low_9
[»] chr8 (8 HSPs)
chr8 (8-305)||(12339564-12339861)
chr8 (59-103)||(5295461-5295505)
chr8 (59-103)||(15160501-15160545)
chr8 (115-155)||(17920959-17920999)
chr8 (115-155)||(29312303-29312343)
chr8 (115-155)||(40362438-40362478)
chr8 (115-155)||(43084737-43084777)
chr8 (115-155)||(43594832-43594872)
[»] chr6 (1 HSPs)
chr6 (23-103)||(9940702-9940780)
[»] chr3 (5 HSPs)
chr3 (115-155)||(47137966-47138006)
chr3 (115-155)||(53200787-53200827)
chr3 (116-154)||(25363820-25363858)
chr3 (115-155)||(42071988-42072028)
chr3 (115-155)||(50038278-50038318)
[»] chr5 (6 HSPs)
chr5 (115-153)||(34446137-34446175)
chr5 (23-103)||(34534413-34534491)
chr5 (115-153)||(35766010-35766048)
chr5 (59-155)||(43584431-43584527)
chr5 (115-155)||(4630868-4630908)
chr5 (115-155)||(7579979-7580019)
[»] chr4 (5 HSPs)
chr4 (59-103)||(22220418-22220462)
chr4 (116-155)||(6991376-6991415)
chr4 (115-153)||(10573268-10573306)
chr4 (115-153)||(49089469-49089507)
chr4 (115-155)||(50623086-50623126)
[»] chr2 (8 HSPs)
chr2 (115-155)||(28072570-28072610)
chr2 (115-155)||(29411699-29411739)
chr2 (115-153)||(14285943-14285981)
chr2 (62-103)||(27964428-27964469)
chr2 (115-155)||(4469504-4469544)
chr2 (115-155)||(6220514-6220554)
chr2 (119-155)||(27986039-27986075)
chr2 (115-155)||(38926609-38926649)
[»] chr1 (7 HSPs)
chr1 (8-103)||(29567950-29568043)
chr1 (59-103)||(34047288-34047332)
chr1 (115-153)||(26352189-26352227)
chr1 (23-103)||(31699308-31699386)
chr1 (115-155)||(12591190-12591230)
chr1 (115-155)||(25487091-25487131)
chr1 (115-155)||(48009013-48009053)
[»] scaffold0565 (1 HSPs)
scaffold0565 (115-155)||(9751-9791)
[»] chr7 (4 HSPs)
chr7 (115-155)||(24680131-24680171)
chr7 (115-155)||(27935770-27935810)
chr7 (115-155)||(27947609-27947649)
chr7 (116-152)||(29531044-29531080)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 12339861 - 12339564
Alignment:
Q  8 aaattattcttattgactattggttagtttttcattatagtaaaattcatgtattttggaagtagtgtgtatactattaattggagtgtacaattgggnn 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  12339861 aaattattcttattgattattggttagtttttcattatagtaaaattcatgtattttggaagtagtgtgtatactattaattggagtgtacaattggaaa 12339762  T
Q  108 nnnnnnngttattattgtattgaaaactaaaaatgacattcattttaatttannnnnnnnnngctaaagtaacattcattttaaaacgaacgaagtatta 207  Q
            ||||||||||||||||||||||||||||||||||||||||  ||          ||||||||||||||||||||||||||||||||||||||    
T  12339761 aagaaaaattattattgtattgaaaactaaaaatgacattcattttaaaatattttttttttgctaaagtaacattcattttaaaacgaacgaagtatta 12339662  T
Q  208 ttttattggagaaaatacatgtagatcgcgcatgcgagactcattcttaaaatgacgtgacttccattataaagagtatgttaaaatagaataatact 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12339661 ttttattggagaaaatacatgtagatcgcgcatgcgagactcattcttgaaatgacgtgacttccattataaagagtatgttaaaatagaataatact 12339564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 5295461 - 5295505
Alignment:
Q  59 tattttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    ||||||||||||||||| |||| ||||||||| || |||||||||    
T  5295461 tattttggaagtagtgtatataatattaattgaagggtacaattg 5295505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 15160501 - 15160545
Alignment:
Q  59 tattttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    |||||||||||||||||| | | |||||||||||| |||||||||    
T  15160501 tattttggaagtagtgtgcagagtattaattggagggtacaattg 15160545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 17920999 - 17920959
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  17920999 gttattattgcattgaaaactgaaagtgacattcattttaa 17920959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 29312303 - 29312343
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||| ||||| |||||||||||||||||||    
T  29312303 gttattattgcattggaaactgaaaatgacattcattttaa 29312343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 40362478 - 40362438
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  40362478 gttattattgcattgaaaactgaaagtgacattcattttaa 40362438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 43084737 - 43084777
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  43084737 gttattattgcattgaaaactgaaagtgacattcattttaa 43084777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 43594872 - 43594832
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    ||||||||||||||||||| |||||  ||||||||||||||    
T  43594872 gttattattgtattgaaaattaaaagcgacattcattttaa 43594832  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 9940780 - 9940702
Alignment:
Q  23 actattggttagtttttcattatagtaaaattcatgtattttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    |||||||||| ||||||||||| || |||| | ||  ||||||||||||||||||||| ||||||||| || |||||||||    
T  9940780 actattggtttgtttttcattaaagaaaaaataat--attttggaagtagtgtgtataatattaattgaagggtacaattg 9940702  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 47138006 - 47137966
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  47138006 gttattattgcattgaaaactaaaaatgacattcattttaa 47137966  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 53200787 - 53200827
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  53200787 gttattattgcattgaaaactaaaagtgacattcattttaa 53200827  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 25363820 - 25363858
Alignment:
Q  116 ttattattgtattgaaaactaaaaatgacattcatttta 154  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  25363820 ttattattgtattagaaactaaaaatgacattcatttta 25363858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 42072028 - 42071988
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||| |||||||||||||||| ||||||||    
T  42072028 gttattattgcattggaaactaaaaatgacatccattttaa 42071988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 50038278 - 50038318
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  50038278 gttattattgcattgaaaactgaaagtgacattcattttaa 50038318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 34446137 - 34446175
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcatttt 153  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  34446137 gttattattgtattgaaaactgaaaatgacattcatttt 34446175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 34534491 - 34534413
Alignment:
Q  23 actattggttagtttttcattatagtaaaattcatgtattttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    |||||||||| ||||||||||| || |||| | ||  ||||||||||||||||| ||| ||||||||| || |||||||||    
T  34534491 actattggtttgtttttcattaaagaaaaaataat--attttggaagtagtgtgcatagtattaattgaagggtacaattg 34534413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 35766010 - 35766048
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcatttt 153  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  35766010 gttattattgtattgaaaactgaaagtgacattcatttt 35766048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 43584431 - 43584527
Alignment:
Q  59 tattttggaagtagtgtgtatactattaattggagtgtacaattgggnnnnnnnnngttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||||||||||| | | |||||||||||| ||| |||||           |||||||||| |||||||||| |||| ||||||||||||||    
T  43584431 tattttggaagtagtgtgcagagtattaattggagggtataattgaaaagaaaaaagttattattgcattgaaaactgaaaacgacattcattttaa 43584527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 4630908 - 4630868
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    ||||||||||||||||||||| ||| ||||||| |||||||    
T  4630908 gttattattgtattgaaaactgaaagtgacatttattttaa 4630868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 7579979 - 7580019
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    ||||||||||||||||||||| ||| | |||||||||||||    
T  7579979 gttattattgtattgaaaactgaaagtaacattcattttaa 7580019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 22220418 - 22220462
Alignment:
Q  59 tattttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    |||||||||||||||||| ||| |||||||||||| |||||||||    
T  22220418 tattttggaagtagtgtgcatagtattaattggagggtacaattg 22220462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 6991376 - 6991415
Alignment:
Q  116 ttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  6991376 ttattattgtattgaaaactgaaagtgacattcattttaa 6991415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 10573268 - 10573306
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcatttt 153  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  10573268 gttattattgcattggaaactaaaaatgacattcatttt 10573306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 49089507 - 49089469
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcatttt 153  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  49089507 gttattattgcattgaaaactaaaagtgacattcatttt 49089469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 50623126 - 50623086
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||||||||| |||| ||||||||    
T  50623126 gttattattgcattgaaaactaaaaataacatacattttaa 50623086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 28072610 - 28072570
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  28072610 gttattattgtattgaaaactgaaagtgacattcattttaa 28072570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 29411739 - 29411699
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  29411739 gttattattgcattgaaaactaaaagtgacattcattttaa 29411699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 14285981 - 14285943
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcatttt 153  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  14285981 gttattattgtattggaaactgaaaatgacattcatttt 14285943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 27964428 - 27964469
Alignment:
Q  62 tttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    ||||||||||||||||||| ||||||||| || |||||||||    
T  27964428 tttggaagtagtgtgtatagtattaattgaagggtacaattg 27964469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 4469544 - 4469504
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    ||||||||||||||||||||| ||| ||| |||||||||||    
T  4469544 gttattattgtattgaaaactgaaagtgaaattcattttaa 4469504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 6220514 - 6220554
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||| ||||||||| |||||||||||||||    
T  6220514 gttattattgcattggaaactaaaagtgacattcattttaa 6220554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 27986075 - 27986039
Alignment:
Q  119 ttattgtattgaaaactaaaaatgacattcattttaa 155  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  27986075 ttattgtattgaaaactgaaagtgacattcattttaa 27986039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 38926649 - 38926609
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  38926649 gttattattgcattgaaaactgaaagtgacattcattttaa 38926609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 29568043 - 29567950
Alignment:
Q  8 aaattattcttattgactattggttagtttttcattatagtaaaattcatgtattttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    |||||||||| ||  |||||||||| ||||||||||| || |||| | ||  | |||||||||||||| |||| ||||||||| || |||||||||    
T  29568043 aaattattctaatcaactattggtttgtttttcattaaagaaaaaataat--actttggaagtagtgtatatagtattaattgaagggtacaattg 29567950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 34047288 - 34047332
Alignment:
Q  59 tattttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    |||||||||||||||||||| | |||||||||||| |||||||||    
T  34047288 tattttggaagtagtgtgtagagtattaattggagggtacaattg 34047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 26352189 - 26352227
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcatttt 153  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  26352189 gttattattgcattgaaaactaaaagtgacattcatttt 26352227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 31699308 - 31699386
Alignment:
Q  23 actattggttagtttttcattatagtaaaattcatgtattttggaagtagtgtgtatactattaattggagtgtacaattg 103  Q
    |||||||||| ||||||||||| || |||| | ||  |||||||||||| ||| |||| ||||||||| || |||||||||    
T  31699308 actattggtttgtttttcattaaagaaaaaataat--attttggaagtaatgtttatagtattaattgaagggtacaattg 31699386  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 12591190 - 12591230
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||| ||||||||| |||||||||||||||    
T  12591190 gttattattgcattggaaactaaaagtgacattcattttaa 12591230  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 25487131 - 25487091
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  25487131 gttattattgcattgaaaactgaaagtgacattcattttaa 25487091  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 48009053 - 48009013
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| ||| ||||||||||||| ||||||||||||    
T  48009053 gttattattgcattaaaaactaaaaatgccattcattttaa 48009013  T

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Target: scaffold0565 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 9751 - 9791
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||| ||||| |||||||||||||||||||    
T  9751 gttattattgcattggaaactgaaaatgacattcattttaa 9791  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 24680171 - 24680131
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||| ||||| |||||||||||||||||||    
T  24680171 gttattattgcattggaaactgaaaatgacattcattttaa 24680131  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 27935810 - 27935770
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  27935810 gttattattgcattgaaaactgaaagtgacattcattttaa 27935770  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 27947609 - 27947649
Alignment:
Q  115 gttattattgtattgaaaactaaaaatgacattcattttaa 155  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  27947609 gttattattgcattgaaaactgaaagtgacattcattttaa 27947649  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 29531044 - 29531080
Alignment:
Q  116 ttattattgtattgaaaactaaaaatgacattcattt 152  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  29531044 ttattattgcattgaaaactgaaaatgacattcattt 29531080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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