View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1599-INSERTION-1 (Length: 368)
Name: NF1599-INSERTION-1
Description: NF1599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1599-INSERTION-1 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 12454896 - 12454562
Alignment:
| Q |
8 |
attgaaggtgttttttcatgaactagtacatcttttcatttaactattgttccctaaacaatcattgaatgatacacttaatacaaattacatctcaatt |
107 |
Q |
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| T |
12454896 |
attgaaggtgttttttcatgaactagtacatcttttcatttaactattgttccctaaacaatcattgaatgatacacttaatacaaatcacctttcaatt |
12454797 |
T |
|
| Q |
108 |
ttcagtactatttgtaattttcaacatagatacaaatataaaactcagcagcttcataataattacaacaaggga-nnnnnnnnncttgtcgtgcgccct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |
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| T |
12454796 |
ttcagtactatttgtaattttcaacatagatacaaatataaaactcagcagcttcataataattacaacaagagattttttttttcttgtcatgcgccct |
12454697 |
T |
|
| Q |
207 |
agaacatttcggataatataatccgaaccaggtgggaaaagaaactctctaattacaatatcaattcaaacaaatttcttattgaggctacatgtgaata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12454696 |
agaacatttcggataatataatccgaaccaggtgggaaaagaaactctctaattacaatatcaattcaaacaaatttcttattgaggctacatgtgaata |
12454597 |
T |
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| Q |
307 |
tactattcttcaaactttccaaaaacatattaaat |
341 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
12454596 |
tactattcttcaaactttccaaaaacatattaaat |
12454562 |
T |
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