View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1599-INSERTION-2 (Length: 239)
Name: NF1599-INSERTION-2
Description: NF1599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1599-INSERTION-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 2788614 - 2788383
Alignment:
| Q |
9 |
gattttttatctaaaactaaaattcatgaataggaaaagaaaattaagataagagagaagttgaaactgaaatttacatagattaaagtaatttacttca |
108 |
Q |
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| T |
2788614 |
gatttttaatctaaaactaaaattcatgaataggaaaagaaaattaagataagagagaagttgaaactgaaatttacatagattaaagtaatttacttca |
2788515 |
T |
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| Q |
109 |
ggaacaataaaaggcaccatatccataattccatttgttgttgagtttgcgacatgcttcaattgtgtgtg-ttcgttttcttttaagtgtggcttttgt |
207 |
Q |
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| T |
2788514 |
ggaacaataaaaggcaccatatccataattccagttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttcttttaagtgtggcttttgt |
2788415 |
T |
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| Q |
208 |
caaagtatactatggtctatagtatcaaacta |
239 |
Q |
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| T |
2788414 |
caaagtatactatggtctatagtatcaaacta |
2788383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 46121434 - 46121520
Alignment:
| Q |
12 |
tttttatctaaaactaaaattcatgaataggaaaagaaaattaagataagagagaagttgaaactgaaatttacatagattaaagtaattta |
103 |
Q |
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| T |
46121434 |
tttttatctaaaactaaaattgataa----gcaaaaaaaataaagataagagaggagttgaaaatgaaattgacata-attaaagtaattta |
46121520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 22365340 - 22365146
Alignment:
| Q |
12 |
tttttatctaaaactaaaattcatgaataggaaaagaaaattaagataagagagaagttgaaactgaaatttacatagattaaagtaatttacttcagga |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22365340 |
ttttgatctaaaactaaaattcatgaataggaaaagaaaatcaagataatagagaagttgaaactgaaatttacatagattaaagtaatttacttaagga |
22365241 |
T |
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| Q |
112 |
acaataaaaggcaccatatccataattccatttgttgttgagtttgcgacatgcttcaattgtgtgtg-ttcgttttcttttaagtgtggctttt |
205 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
22365240 |
acaataaaaagcaccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggctttt |
22365146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 22365085 - 22365053
Alignment:
| Q |
207 |
tcaaagtatactatggtctatagtatcaaacta |
239 |
Q |
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| T |
22365085 |
tcaaagtatactatggtctatagtatcaaacta |
22365053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 29782226 - 29782312
Alignment:
| Q |
12 |
tttttatctaaaactaaaattcatgaataggaaaagaaaattaagataagagagaagttgaaactgaaatttacatagattaaagtaattta |
103 |
Q |
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| T |
29782226 |
tttttatctaaaactaaaattgataa----gcaaaaaaaataaagataagagaggagttgaaaatgaaattgacata-attaaagtaattta |
29782312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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