View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1599-INSERTION-3 (Length: 289)
Name: NF1599-INSERTION-3
Description: NF1599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1599-INSERTION-3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 2324037 - 2323763
Alignment:
| Q |
8 |
taatcctataatagtggttgtgtcacatcagcaaaaaa--gctacaaaaatgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaacat |
105 |
Q |
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| T |
2324037 |
taatcctataatagtcgttgtgtcacatcagtaaaaaaaagctacaaaaatgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaacat |
2323938 |
T |
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| Q |
106 |
ccattttttatgcttttaattttcgctcgagctagaaaaatttcttaaagatggcgagcgaaatacaaccaattgaaccaaattgtatttgttaatagaa |
205 |
Q |
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| T |
2323937 |
tcattttttatgcttttaattttcgctcgagctagaaaaatttcttaaaggtggcgagcgaaatacaacca----------attgtatttgttaatagaa |
2323848 |
T |
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| Q |
206 |
tccactagctatagcataaagggttttcatgtccaattgcat-gttttttaatccatcttaatcaagtctctttgtttaaagcag |
289 |
Q |
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| T |
2323847 |
tccactagctatagcataaagggttttcatgtccaattgcatagttttttaatccatcttaatcaagtctctttgtttaaagcag |
2323763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 2344895 - 2344858
Alignment:
| Q |
172 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
209 |
Q |
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| T |
2344895 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
2344858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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