View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1599-INSERTION-7 (Length: 779)
Name: NF1599-INSERTION-7
Description: NF1599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1599-INSERTION-7 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 182 - 745
Target Start/End: Complemental strand, 42683170 - 42682605
Alignment:
| Q |
182 |
ttggctggagaatagaaaaaggagtgtcaagaacaagctaaagatatagaacgcgagaattgagagcgattgacaacagacacctatgagacccagtaga |
281 |
Q |
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| T |
42683170 |
ttggctggagaatagaaaaaggagtgtcaagaacaagataaagatatagaacgcgagaattgagagcgattgacaacagacacctatgagacccagtaga |
42683071 |
T |
|
| Q |
282 |
gaaatctcacattctgtgttagcttgtctggtattccatatccttaaaccaaaaaccaatattgcaattgaaacaaacaatgttaagatgttcacgattt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42683070 |
gaaatctcacattctgtgttagcttgtctggtattccatatccttaaaccaaaaaccaatattgcaattgaaacaaacaatgttaagacgttcacgattt |
42682971 |
T |
|
| Q |
382 |
ggatcaagatgttgcataattgatcattcttgtatttgtcacnnnnnnnn-ataatccatgtccttaatccctgggttggcttgttccattcttgatgat |
480 |
Q |
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| T |
42682970 |
ggatcaagatgttgcataattgaccattcttgtatttgtcactttttttttataatccatgttcttaatccctgggttggcttgttccattcttgatgat |
42682871 |
T |
|
| Q |
481 |
ggtgaaataaaattgtgtattgatacgaaagaatgtgatgaaaaagaaaactgacgagnnnnnnnactaggtttttcttgtttgttttctaggacagata |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
42682870 |
ggtgaaataaaattgtgtattgatacgaaagaatgtgatgaaaaagaaaactgacgagtttttttactaggtttttcttgtttgttttctaggacaggta |
42682771 |
T |
|
| Q |
581 |
atgtatatgttaagacagaaattga-agcaaggaaaacatcaataataggaatcaataccagaactaatttcaacttaaattatacacaattcaaactag |
679 |
Q |
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| T |
42682770 |
atgtatatgttaagacagaaattgacaacaagggaaacattaataataggaatcaataccagaactaatttcaacttaaattatacacaattcaaactag |
42682671 |
T |
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| Q |
680 |
attttggcaaaaagttacaagtttcaagctatgaaactaagacacttctacggtgcagttaggaaa |
745 |
Q |
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| T |
42682670 |
attttggcaaaaagttacaagttttaagctataaaactaaggcacttctacggtgcagttaggaaa |
42682605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 42683389 - 42683218
Alignment:
| Q |
6 |
cataaaagcaatcaacaagaacataaatccaataaagaaaaataaaattctaacctgaataggtgagaagtgctcagtgtagaatttgcgaaagaaatcg |
105 |
Q |
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| T |
42683389 |
cataaaagcaatcaacaagaacataaatccaataaagaaaaataaaattctaacctgaataggtgagaagttctcagtgtagaatttgcgaaagaaatcg |
42683290 |
T |
|
| Q |
106 |
ttgggacttgggagtttccgaatgaagatcagagcaaaaattttgaggttgcaaacaactcttaaacgcataccaattg |
184 |
Q |
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| T |
42683289 |
tt-------gggagtttccgaatgaagatcagagcaaaaattttgaggttgcaaacaactcttaaacgcataccaattg |
42683218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 42686073 - 42686040
Alignment:
| Q |
49 |
aaaattctaacctgaataggtgagaagtgctcag |
82 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
42686073 |
aaaattctaacctgaataggtgagaagtgatcag |
42686040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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