View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1599-INSERTION-8 (Length: 750)

Name: NF1599-INSERTION-8
Description: NF1599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1599-INSERTION-8
NF1599-INSERTION-8
[»] chr7 (5 HSPs)
chr7 (8-750)||(25308371-25309106)
chr7 (162-316)||(9084001-9084155)
chr7 (8-109)||(9083877-9083978)
chr7 (336-467)||(6667736-6667868)
chr7 (411-459)||(27535844-27535892)
[»] chr6 (11 HSPs)
chr6 (149-307)||(3973808-3973967)
chr6 (335-467)||(2488462-2488595)
chr6 (335-459)||(12653974-12654099)
chr6 (331-467)||(31705501-31705638)
chr6 (335-387)||(5416961-5417013)
chr6 (407-467)||(5545072-5545132)
chr6 (335-387)||(18248811-18248863)
chr6 (335-467)||(23654590-23654722)
chr6 (331-440)||(16328765-16328875)
chr6 (421-459)||(29285276-29285314)
chr6 (53-106)||(3973980-3974033)
[»] chr4 (14 HSPs)
chr4 (152-304)||(10122956-10123109)
chr4 (336-467)||(24568365-24568495)
chr4 (330-450)||(56062309-56062430)
chr4 (8-111)||(10122842-10122945)
chr4 (335-459)||(7083477-7083602)
chr4 (335-467)||(18502490-18502623)
chr4 (335-467)||(20887405-20887538)
chr4 (335-467)||(27091048-27091181)
chr4 (411-459)||(46268082-46268130)
chr4 (411-459)||(50274380-50274428)
chr4 (411-468)||(13965960-13966017)
chr4 (410-467)||(14346826-14346883)
chr4 (410-467)||(34668581-34668638)
chr4 (331-392)||(35658263-35658324)
[»] chr1 (6 HSPs)
chr1 (149-315)||(9017261-9017428)
chr1 (28-108)||(9017439-9017519)
chr1 (411-467)||(12872023-12872079)
chr1 (412-467)||(28666476-28666531)
chr1 (316-448)||(29551432-29551566)
chr1 (335-472)||(42491212-42491347)
[»] chr2 (15 HSPs)
chr2 (335-467)||(11798186-11798318)
chr2 (399-467)||(13113416-13113484)
chr2 (411-459)||(13548575-13548623)
chr2 (411-479)||(13878645-13878713)
chr2 (411-479)||(14018770-14018838)
chr2 (335-458)||(20570298-20570422)
chr2 (411-467)||(34416411-34416467)
chr2 (316-387)||(32015574-32015645)
chr2 (335-381)||(17056212-17056258)
chr2 (335-381)||(17068659-17068705)
chr2 (335-381)||(17074642-17074688)
chr2 (335-381)||(17095229-17095275)
chr2 (335-381)||(17118557-17118603)
chr2 (315-353)||(19382218-19382256)
chr2 (316-464)||(9689636-9689785)
[»] chr8 (6 HSPs)
chr8 (316-467)||(30026538-30026690)
chr8 (335-459)||(5526142-5526267)
chr8 (331-392)||(11298494-11298555)
chr8 (335-387)||(5989938-5989990)
chr8 (336-468)||(24790825-24790956)
chr8 (400-459)||(10334882-10334941)
[»] chr3 (6 HSPs)
chr3 (335-459)||(3457262-3457387)
chr3 (334-467)||(19645530-19645663)
chr3 (411-468)||(55455279-55455336)
chr3 (334-459)||(48401431-48401557)
chr3 (335-459)||(2192418-2192543)
chr3 (320-405)||(47733609-47733694)
[»] chr5 (5 HSPs)
chr5 (316-459)||(32309817-32309961)
chr5 (335-467)||(11734493-11734626)
chr5 (335-467)||(42781341-42781474)
chr5 (411-459)||(7771477-7771525)
chr5 (331-387)||(15710865-15710921)
[»] scaffold0536 (1 HSPs)
scaffold0536 (335-467)||(3235-3368)


Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 750
Target Start/End: Original strand, 25308371 - 25309106
Alignment:
Q  8 aagataatgatctgagatgattaaagggttaactgaggaaatgcctaaccagagattaaccaactgccaaacctgataaaaaacatcacaatgcaagaat 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25308371 aagataatgatctgagatgattaaagggttaattgaggaaatgcctaaccagagatgaaccaactgccaaacctgataaaaaacatcacaatgcaagaat 25308470  T
Q  108 aagtatgcaatctcatatcagagatgcacactgagatccaccgattcaatcatcccacaaccagagatgcacaatgagtatcttcctgaatgatcattct 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||        
T  25308471 aagtatgcaatctcagatcagagatgcacactgagatccaccgattcaatcatcccacaaccagagatgcacaccgagcatcttcctgaatgatca---- 25308566  T
Q  208 ccgatataaattttccttcgtatgcaatctatcacggagaagccgccaagcaaacactgaaactttaagcgagatatttttcctccagatgctaggcgca 307  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| || |||||||||||||||||||||||||    
T  25308567 -----ataaattttccttcgtatgcaatctatcacggagaagccgccaagcaaacaccaaaactttaagcgggacatttttcctccagatgctaggcgca 25308661  T
Q  308 acagctgataggcataaataatatgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcatttaagcggctttgaact 407  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||    
T  25308662 acagctgataggcataaataatatgtcgttttatgctattaacatgaattttgtgagtttgttcgtatattcatcattttcatttaaacagctttgaact 25308761  T
Q  408 tacattgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaatgaaatatataagtggagaaactgactgcattttaaaatc 507  Q
    || ||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25308762 tatattgtatcaatataatatatcaattcgaatgaataaatatcgtttatttctatcaaatgaaatatataagtggagaaactgactgcattttaaaatc 25308861  T
Q  508 aagagagcaaagattatgaatgaatatagaaatgaagaaactaaagtcatgaattagacaaaatacgagataaaaaattaagggccgtttgtttgggatt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  25308862 aagagagcaaagattatgaatgaatatagaaatgaagaaactaaagtcatgaattagacaaaatacgagataaaaaatcaagggcggtttgtttgggatt 25308961  T
Q  608 tac----nnnnnnnnnnntctatttttcgactaaaagatatannnnnnnnnatctttatattatttgtttcagatttgaaagaaaaaatgnnnnnnnatt 703  Q
    |||               |||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||       |||    
T  25308962 tacaaaaaaaaaaaaaaatctatttttcgactaaaagatat-tttttttttatctttatattatttgtttcagatttgaaagaaaaaatg-ttttttatt 25309059  T
Q  704 ctcaaaatgaaaagttattcataaatctattttttctaataaaggaa 750  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  25309060 ctcaaaatgaaaagttattcataaatctatattttctaataaaggaa 25309106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 162 - 316
Target Start/End: Original strand, 9084001 - 9084155
Alignment:
Q  162 ccacaaccagagatgcacaatgagtatcttcctgaatgatcattctccgatataaattttccttcgtatgcaatctatcacggagaagccgccaagcaaa 261  Q
    |||||||||||||  || | |||| |||||||||||| ||| |||||||||||||||| |||||| || ||| |||||||||||||||||||||||||||    
T  9084001 ccacaaccagagacacaaactgagcatcttcctgaataatccttctccgatataaattgtccttcataggcactctatcacggagaagccgccaagcaaa 9084100  T
Q  262 cactgaaactttaagcgagatatttttcctccagatgctaggcgcaacagctgat 316  Q
     |||||||||||||||  || ||||| |||||||||||||||||||  |||||||    
T  9084101 gactgaaactttaagcaggacattttacctccagatgctaggcgcagaagctgat 9084155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 9083877 - 9083978
Alignment:
Q  8 aagataatgatctgagatgattaaagggttaactgaggaaatgcctaaccagagattaaccaactgccaaacctgataaaaaacatcacaatgcaagaat 107  Q
    |||||||||| |||| ||| ||||||||||||| || ||||  |||||||| |||| |||||||||||||||||||  ||| || || ||||||||||||    
T  9083877 aagataatgagctgatatggttaaagggttaaccgaagaaacacctaaccaaagatgaaccaactgccaaacctgaccaaatacttcgcaatgcaagaat 9083976  T
Q  108 aa 109  Q
    ||    
T  9083977 aa 9083978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 467
Target Start/End: Original strand, 6667736 - 6667868
Alignment:
Q  336 ttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaat 434  Q
    |||||||||||||||||| || |||| || |||||| || ||||||| ||||  |||  ||||  |||||| ||  |||||||| ||||  | |||||||    
T  6667736 ttttatgctattaacatggatgttgtgagtttgttcatagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgatgtgctctatcaat 6667835  T
Q  435 tcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |  ||||||| |||||||||||||| |||||||    
T  6667836 ttgaatgaatgaatatcgtttatttttgtcaaa 6667868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 27535844 - 27535892
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttattt 459  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||||||    
T  27535844 attgtatcgatgtactctatcaatttaaatgaataaatatcgtttattt 27535892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 149 - 307
Target Start/End: Complemental strand, 3973967 - 3973808
Alignment:
Q  149 cgattcaatcatcccacaaccagagatgcacaa-tgagtatcttcctgaatgatcattctccgatataaattttccttcgtatgcaatctatcacggaga 247  Q
    ||||||||||||||| ||||||||||  ||||| |||| |||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||    
T  3973967 cgattcaatcatcccgcaaccagagacacacaactgagcatcttcctgaatgatccttctccgatatagattatccttcgtaggcaatctatcacggaga 3973868  T
Q  248 agccgccaagcaaacactgaaactttaagcgagatatttttcctccagatgctaggcgca 307  Q
    ||||||||| |||| ||||||||||||||||  | |||||||||||| ||| ||||||||    
T  3973867 agccgccaaacaaaaactgaaactttaagcggtacatttttcctccaaatgttaggcgca 3973808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 2488462 - 2488595
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||  || ||||||| ||||||| ||||| ||| ||||  |||  |  | ||||| | ||  |||||||| ||||| | ||||||    
T  2488462 gttttatgctattaacatagatgttgtaagtttgttcgcatatttatcctttttgtttttaatgactttggatttgtattgtatcgatgtactctatcaa 2488561  T
Q  434 ttcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||  |||||||||||||||||||||| |||||||    
T  2488562 tttgaatgaataaatatcgtttatttttgtcaaa 2488595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 459
Target Start/End: Complemental strand, 12654099 - 12653974
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||| ||  ||| || ||||||| | ||||||||||||  |||  |||| ||||| | ||  |||||||| ||||| | ||||||    
T  12654099 gttttatgctattaacatggatgatgtgagtttgttcgcagattcatcatttttgtttttagcgactttggaattgtattgtatcgatgtactctatcaa 12654000  T
Q  434 ttcaaatgaataaatatcgtttattt 459  Q
    ||  ||||||| ||||||||||||||    
T  12653999 tttgaatgaatgaatatcgtttattt 12653974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 467
Target Start/End: Original strand, 31705501 - 31705638
Alignment:
Q  331 tgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatata 429  Q
    ||||||||||||||||||||||  || |||| || ||||||  | ||| ||| |||| ||||  |||   |||||| ||  |||||||| ||||| | ||    
T  31705501 tgttgttttatgctattaacatagatgttgtgagtttgttcacagatttatcctttttatttttagccaatttgaatttgtattgtatcgatgtactcta 31705600  T
Q  430 tcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |||||| |||||||| |||||||||||||| |||||||    
T  31705601 tcaatttaaatgaatgaatatcgtttatttttgtcaaa 31705638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 5417013 - 5416961
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcatttt 387  Q
    ||||||||||||||||||| || |||| || ||||||||| ||||||||||||    
T  5417013 gttttatgctattaacatggatgttgtgagtttgttcgtagattcatcatttt 5416961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 5545072 - 5545132
Alignment:
Q  407 ttacattgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |||||||||||||||||| | ||||||||  ||||||| |||||| ||||||| |||||||    
T  5545072 ttacattgtatcaatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 5545132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 18248863 - 18248811
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcatttt 387  Q
    ||||||||||||||| |||||| |||| || ||||||| ||||||||||||||    
T  18248863 gttttatgctattaatatgaatattgtgagtttgttcgcatattcatcatttt 18248811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 23654590 - 23654722
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcatttaagcggctttgaacttacattgtatcaatgtaatatatcaat 434  Q
    ||||||||||||||||||| ||  ||| || ||||||  | ||||||| ||||  ||| ||||  |||| | ||  |||||||| ||||| | |||||||    
T  23654590 gttttatgctattaacatggatgatgtgagtttgttcacagattcatccttttgtttttagcgaatttggatttgtattgtatcgatgtactctatcaat 23654689  T
Q  435 tcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |  ||||||| |||||||||||||| |||||||    
T  23654690 ttgaatgaatgaatatcgtttatttttgtcaaa 23654722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 440
Target Start/End: Complemental strand, 16328875 - 16328765
Alignment:
Q  331 tgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatata 429  Q
    ||||||||||||||||||| ||| || ||||||| ||||| | ||||||||| ||||  |||| |||| ||||||| ||  |||||||  ||||| | ||    
T  16328875 tgttgttttatgctattaatatggatgttgtaagtttgtttgcatattcatcttttttgtttatagcgactttgaatttgtattgtatggatgtactcta 16328776  T
Q  430 tcaattcaaat 440  Q
    |||||| ||||    
T  16328775 tcaatttaaat 16328765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 459
Target Start/End: Original strand, 29285276 - 29285314
Alignment:
Q  421 tgtaatatatcaattcaaatgaataaatatcgtttattt 459  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  29285276 tgtattatatcaatttaaatgaataaatatcgtttattt 29285314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 3974033 - 3973980
Alignment:
Q  53 taaccagagattaaccaactgccaaacctgataaaaaacatcacaatgcaagaa 106  Q
    |||||| |||| ||||||||| |||| ||||  |||||||||||||||||||||    
T  3974033 taaccaaagatgaaccaactggcaaatctgaccaaaaacatcacaatgcaagaa 3973980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 152 - 304
Target Start/End: Original strand, 10122956 - 10123109
Alignment:
Q  152 ttcaatcatcccacaaccagagatgcacaa-tgagtatcttcctgaatgatcattctccgatataaattttccttcgtatgcaatctatcacggagaagc 250  Q
    ||||||| ||||||||| |||||  || || |||| |||||||||||| ||| |||||||||||||||| |||||| || ||||| |||||||||||| |    
T  10122956 ttcaatcttcccacaactagagacacataactgagcatcttcctgaataatccttctccgatataaattgtccttcataggcaatatatcacggagaacc 10123055  T
Q  251 cgccaagcaaacactgaaactttaagcgagatatttttcctccagatgctaggc 304  Q
    ||||||| ||| |||||||||||||||| || ||||||||||||||| ||||||    
T  10123056 cgccaagaaaaaactgaaactttaagcgggacatttttcctccagatactaggc 10123109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 336 - 467
Target Start/End: Complemental strand, 24568495 - 24568365
Alignment:
Q  336 ttttatgctattaacatgaattttgtaagcttgttcgtatattcat-cattttcatttaagcggctttgaacttacattgtatcaatgtaatatatcaat 434  Q
    ||||||||||||||||||||| |||| || ||||||  |||||||| | ||||  ||| ||||  |||||| ||| |||||||| ||||||| |||||||    
T  24568495 ttttatgctattaacatgaatgttgtgagtttgttcacatattcatcctttttgtttttagcgaatttgaatttatattgtatcgatgtaatctatcaat 24568396  T
Q  435 tcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |  ||||||| ||||||  |||||| |||||||    
T  24568395 ttgaatgaatgaatatc--ttatttttgtcaaa 24568365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 330 - 450
Target Start/End: Original strand, 56062309 - 56062430
Alignment:
Q  330 atgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcat-cattttcatttaagcggctttgaacttacattgtatcaatgtaatat 428  Q
    ||||||||| |||||||||| ||| || ||||||| ||||||||||||| || | ||||  ||| |||| ||||||| ||  ||||||| |||||| |||    
T  56062309 atgttgtttcatgctattaatatggatgttgtaagtttgttcgtatattaatcctttttgtttttagcgactttgaatttgtattgtatgaatgtactat 56062408  T
Q  429 atcaattcaaatgaataaatat 450  Q
    |||||||  ||||||| |||||    
T  56062409 atcaattttaatgaatgaatat 56062430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 10122842 - 10122945
Alignment:
Q  8 aagataatgatctgagatgattaaagggttaactgaggaaatgcctaaccagagattaaccaactgccaaacctgataaaaaacatcacaatgcaagaat 107  Q
    ||||||||||||||| ||||||||||| || || || |||| |||||||||  ||| |||||||||||| ||| ||  ||| || |||||||| || |||    
T  10122842 aagataatgatctgacatgattaaaggatttaccgaagaaacgcctaaccaacgatgaaccaactgccacacccgaccaaacacgtcacaatgtaaaaat 10122941  T
Q  108 aagt 111  Q
    ||||    
T  10122942 aagt 10122945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 459
Target Start/End: Complemental strand, 7083602 - 7083477
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||| || |||| || ||||||  | ||||||| |||| ||||  ||||  |||||| ||| |||||||| ||||| | ||||||    
T  7083602 gttttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttatttttagcgaatttgaatttatattgtatcgatgtactctatcaa 7083503  T
Q  434 ttcaaatgaataaatatcgtttattt 459  Q
    ||  | ||||| ||||||||||||||    
T  7083502 tttgagtgaatgaatatcgtttattt 7083477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 18502623 - 18502490
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||| ||| ||| || ||||||  | ||||||| ||||  |||  ||||  |||| | ||  |||||||| ||||| | ||||||    
T  18502623 gttttatgctattaacatggattctgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgatgtactctatcaa 18502524  T
Q  434 ttcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    || |||||||| |||||||||||||| |||||||    
T  18502523 tttaaatgaatgaatatcgtttatttttgtcaaa 18502490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 20887538 - 20887405
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    |||||||| |||||||||| || |||| || ||||||  | ||||||| ||||  |||  ||||  |||| | ||| |||||||| ||||| | ||||||    
T  20887538 gttttatgatattaacatggatgttgtgagtttgttcacagattcatcttttttgtttttagcgaatttggatttatattgtatcgatgtactctatcaa 20887439  T
Q  434 ttcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    || |||||||| |||||||||||||| |||||||    
T  20887438 tttaaatgaatgaatatcgtttatttttgtcaaa 20887405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 27091048 - 27091181
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||  || ||||||| ||||||| ||||| ||| ||||  |||  |  | ||||| | ||  |||||||| ||||| | ||||||    
T  27091048 gttttatgctattaacatagatgttgtaagtttgttcgcatatttatcctttttgtttttaatgactttggatttgtattgtatcgatgtactctatcaa 27091147  T
Q  434 ttcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||  |||||||||||||||||||||| |||||||    
T  27091148 tttgaatgaataaatatcgtttatttttgtcaaa 27091181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 46268082 - 46268130
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttattt 459  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||||||    
T  46268082 attgtatcgatgtactctatcaatttaaatgaataaatatcgtttattt 46268130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 50274428 - 50274380
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttattt 459  Q
    |||||||||||||| | ||| |||| |||||||||||||||||||||||    
T  50274428 attgtatcaatgtactttattaatttaaatgaataaatatcgtttattt 50274380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 13965960 - 13966017
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaat 468  Q
    |||||||| ||||| | ||||||||  ||||||| |||||||||||||| ||||||||    
T  13965960 attgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaat 13966017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 14346826 - 14346883
Alignment:
Q  410 cattgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||||||||| ||||| | ||||||||  ||||||| |||||||||||||| |||||||    
T  14346826 cattgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 14346883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 34668581 - 34668638
Alignment:
Q  410 cattgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |||| |||| ||||| | |||||||| ||||||||||||||| ||||||| |||||||    
T  34668581 cattatatcgatgtactttatcaatttaaatgaataaatatcatttatttttgtcaaa 34668638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 35658324 - 35658263
Alignment:
Q  331 tgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattt 392  Q
    ||||||||||||||||||||||| ||  ||| || |||||| || |||||||||||| ||||    
T  35658324 tgttgttttatgctattaacatggatgatgtgagtttgttcataaattcatcatttttattt 35658263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 149 - 315
Target Start/End: Complemental strand, 9017428 - 9017261
Alignment:
Q  149 cgattcaatcatcccacaaccagagatgcacaa-tgagtatcttcctgaatgatcattctccgatataaattttccttcgtatgcaatctatcacggaga 247  Q
    ||||||||||||||| ||||||||||| || || || | |||||| |||| |||| ||||| |||||||||| || |||||| ||||||||||||||| |    
T  9017428 cgattcaatcatcccgcaaccagagatacataactgcgcatcttcttgaaagatccttctctgatataaattgtctttcgtaggcaatctatcacggaaa 9017329  T
Q  248 agccgccaagcaaacactgaaactttaagcgagatatttttcctccagatgctaggcgcaacagctga 315  Q
    ||||| | | |||| |||||||  ||||| | || || |||||||||||  ||| ||||| |||||||    
T  9017328 agccgtccaacaaagactgaaatcttaagagggacatatttcctccagacactaagcgcatcagctga 9017261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 9017519 - 9017439
Alignment:
Q  28 ttaaagggttaactgaggaaatgcctaaccagagattaaccaactgccaaacctgataaaaaacatcacaatgcaagaata 108  Q
    |||||||||| ||  ||||||  ||| ||||| ||| |||||| ||||||||||||  |||||||||||||||||||||||    
T  9017519 ttaaagggtttaccaaggaaacacctcaccagtgatgaaccaattgccaaacctgaccaaaaacatcacaatgcaagaata 9017439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 12872023 - 12872079
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |||||||||||||| | ||||||||  ||||||| |||||||||||||| |||||||    
T  12872023 attgtatcaatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 12872079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 467
Target Start/End: Original strand, 28666476 - 28666531
Alignment:
Q  412 ttgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||||||| ||||| | ||||||||  |||||||||||||||||||||| |||||||    
T  28666476 ttgtatcgatgtactctatcaatttgaatgaataaatatcgtttatttgtgtcaaa 28666531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 448
Target Start/End: Complemental strand, 29551566 - 29551432
Alignment:
Q  316 taggcataaataatatgttgttttatgctattaacatgaatttt-gtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacatt 413  Q
    |||||||| ||| | || |||| |||||||||| ||||||| || || || ||||| | ||||||||| ||||  |||  |||| ||||||| ||  |||    
T  29551566 taggcatatatactctgctgttctatgctattagcatgaatgttagtgagtttgtttgcatattcatcctttttgtttttagcgactttgaaattgtatt 29551467  T
Q  414 gtatcaatgtaatatatcaattcaaatgaataaat 448  Q
    ||||| ||||||| |||||||| ||||||||||||    
T  29551466 gtatcgatgtaatctatcaatttaaatgaataaat 29551432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 42491212 - 42491347
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcatttaagcggctttgaacttacattgtatcaatgtaatatatcaat 434  Q
    |||||||| |||||||||| || |||| || ||||||  | ||||||||||||  ||| | ||  |||||| ||| |||||||| ||||| | |||||||    
T  42491212 gttttatgttattaacatggatgttgtgagtttgttcacagattcatcatttt--ttttatcgaatttgaatttatattgtatcgatgtactctatcaat 42491309  T
Q  435 tcaaatgaataaatatcgtttatttctgtcaaatgaaa 472  Q
    |  ||||||| ||||| |||||||| ||| ||| ||||    
T  42491310 ttgaatgaatgaatattgtttatttttgtaaaaagaaa 42491347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 11798318 - 11798186
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcatttaagcggctttgaacttacattgtatcaatgtaatatatcaat 434  Q
    ||||||||||||||||||| || |||| || ||||||| | ||||||| ||||  ||| |||| ||||||| ||  |||||||| ||||| | |||||||    
T  11798318 gttttatgctattaacatggatgttgtgagtttgttcgcagattcatctttttatttttagcgactttgaatttgaattgtatcgatgtactctatcaat 11798219  T
Q  435 tcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    | |||||||| |||||||||||||  |||||||    
T  11798218 ttaaatgaatgaatatcgtttattgttgtcaaa 11798186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 13113416 - 13113484
Alignment:
Q  399 ctttgaacttacattgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||||||| ||| ||| |||| ||||| | |||||||| ||||||||||||||||||||||| |||||||    
T  13113416 ctttgaatttatattatatcgatgtattctatcaatttaaatgaataaatatcgtttatttttgtcaaa 13113484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 13548623 - 13548575
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttattt 459  Q
    |||||||| ||||| |||||||||| |||||||| ||||||||||||||    
T  13548623 attgtatcgatgtactatatcaatttaaatgaatgaatatcgtttattt 13548575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 479
Target Start/End: Complemental strand, 13878713 - 13878645
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaatgaaatatataa 479  Q
    |||||||| ||||| | ||||||||  ||||||| |||||||||||||| |||||||  ||||||||||    
T  13878713 attgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaaaaaaatatataa 13878645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 479
Target Start/End: Complemental strand, 14018838 - 14018770
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaatgaaatatataa 479  Q
    |||||||| ||||| | ||||||||  ||||||| |||||||||||||| |||||||  ||||||||||    
T  14018838 attgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaaaaaaatatataa 14018770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 458
Target Start/End: Original strand, 20570298 - 20570422
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||  ||  ||| || ||||||| ||||||||||||||  |||  ||||  |||||| ||  |||||||||||||| | ||||||    
T  20570298 gttttatgctattaacatagatgctgtgagtttgttcgcatattcatcatttttgtttttagcgattttgaatttgaattgtatcaatgtattttatcaa 20570397  T
Q  434 ttcaaatgaataaatatcgtttatt 458  Q
     | ||||| || |||||||||||||    
T  20570398 cttaaatggatgaatatcgtttatt 20570422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 34416467 - 34416411
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |||||||| ||||| | ||||||||| ||||||| |||||||||||||| |||||||    
T  34416467 attgtatcgatgtactctatcaattcgaatgaatgaatatcgtttatttttgtcaaa 34416411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 32015574 - 32015645
Alignment:
Q  316 taggcataaataatatgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcatttt 387  Q
    |||||||||||| | || |||||||||||||||||||| || || |||| ||||||  ||||||| ||||||    
T  32015574 taggcataaatactttgctgttttatgctattaacatggatgttttaagtttgttcacatattcaacatttt 32015645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 17056258 - 17056212
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcat 381  Q
    |||||||||||||||||||||| |||| || ||||||||| ||||||    
T  17056258 gttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17056212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 17068705 - 17068659
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcat 381  Q
    |||||||||||||||||||||| |||| || ||||||||| ||||||    
T  17068705 gttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17068659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 17074688 - 17074642
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcat 381  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  17074688 gttttatgctattaccatgaatgttgtaagtttgttcgtagattcat 17074642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 17095275 - 17095229
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcat 381  Q
    |||||||||||||||||||||| |||| || ||||||||| ||||||    
T  17095275 gttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17095229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 17118603 - 17118557
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcat 381  Q
    |||||||||||||||||||||| |||| || ||||||||| ||||||    
T  17118603 gttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17118557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 19382256 - 19382218
Alignment:
Q  315 ataggcataaataatatgttgttttatgctattaacatg 353  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  19382256 ataggcatagataatatgtcgttttatgctattaacatg 19382218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 464
Target Start/End: Complemental strand, 9689785 - 9689636
Alignment:
Q  316 taggcataaataatatgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattg 414  Q
    ||||||||| || | ||| ||||||||||||||||||| ||  | | || ||||||  ||||||||| |||| ||||  ||||  |||||| ||  |||     
T  9689785 taggcataagtactttgtcgttttatgctattaacatggatgctatgagtttgttcacatattcatcctttttatttttagcgaatttgaatttgtatta 9689686  T
Q  415 tatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtc 464  Q
    |||| ||||| | |||||||| ||||||||  ||||||||||||| ||||    
T  9689685 tatcgatgtactctatcaatttaaatgaatgtatatcgtttatttttgtc 9689636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 316 - 467
Target Start/End: Complemental strand, 30026690 - 30026538
Alignment:
Q  316 taggcataaataatatgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattg 414  Q
    |||||||| ||| | ||||||||||||||||||||||| ||  ||| || ||||||  | ||||||| |||| ||||  ||||  |||||| ||  ||||    
T  30026690 taggcatatatactttgttgttttatgctattaacatggatactgtgagtttgttcacagattcatcctttttatttttagcgaatttgaatttgtattg 30026591  T
Q  415 tatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||||||| || | ||||||||  |||||||||||||||||||||| |||||||    
T  30026590 tatcaatatactctatcaatttgaatgaataaatatcgtttatttttgtcaaa 30026538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 335 - 459
Target Start/End: Original strand, 5526142 - 5526267
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||  ||  ||  || ||||||  ||||||||| |||| ||||  ||||  |||||||||| |||||||| ||||| | ||||||    
T  5526142 gttttatgctattaacatagatgctgcgagtttgttcacatattcatcctttttatttttagcgaatttgaacttatattgtatcgatgtactctatcaa 5526241  T
Q  434 ttcaaatgaataaatatcgtttattt 459  Q
    ||  ||||||||||||||||||||||    
T  5526242 tttgaatgaataaatatcgtttattt 5526267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 11298555 - 11298494
Alignment:
Q  331 tgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattt 392  Q
    ||||||||||||||||||||||| || |||| || |||||| |||||||||| |||| ||||    
T  11298555 tgttgttttatgctattaacatggatgttgtgagtttgttcatatattcatcctttttattt 11298494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 5989938 - 5989990
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcatttt 387  Q
    |||||||||||||||||||||| |||| || ||||||| | ||||||||||||    
T  5989938 gttttatgctattaacatgaatattgtgagtttgttcgcagattcatcatttt 5989990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 468
Target Start/End: Complemental strand, 24790956 - 24790825
Alignment:
Q  336 ttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcatttaagcggctttgaacttacattgtatcaatgtaatatatcaatt 435  Q
    |||||||||||||||||| || |||| || ||||||  | ||||||| ||||  |||| |||  |||| | ||  |||||||| ||||| | ||||||||    
T  24790956 ttttatgctattaacatggatgttgtgagtttgttcacagattcatccttttttttta-gcgaatttggatttgtattgtatcgatgtactctatcaatt 24790858  T
Q  436 caaatgaataaatatcgtttatttctgtcaaat 468  Q
      ||||||| |||||||||||||| ||||||||    
T  24790857 tgaatgaatgaatatcgtttatttttgtcaaat 24790825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 459
Target Start/End: Original strand, 10334882 - 10334941
Alignment:
Q  400 tttgaacttacattgtatcaatgtaatatatcaattcaaatgaataaatatcgtttattt 459  Q
    |||||| |||||||||||||||||| | ||||||||  |||||||  |||||||||||||    
T  10334882 tttgaatttacattgtatcaatgtactctatcaatttgaatgaatggatatcgtttattt 10334941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 459
Target Start/End: Original strand, 3457262 - 3457387
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||| || |||| || ||||||| | ||||||||||||  |||  ||||  |||| | ||  |||||||||||||| | ||||||    
T  3457262 gttttatgctattaacatggatgttgtgagtttgttcgcaaattcatcatttttgtttttagcgaatttggatttgtattgtatcaatgtactctatcaa 3457361  T
Q  434 ttcaaatgaataaatatcgtttattt 459  Q
    || |||||||| ||||||||||||||    
T  3457362 tttaaatgaatgaatatcgtttattt 3457387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 334 - 467
Target Start/End: Original strand, 19645530 - 19645663
Alignment:
Q  334 tgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatca 432  Q
    ||||||||||| ||||||||| | |||| || ||||||  ||||||||| |||||||||  ||||  |||||| ||  |||||||  ||||| | |||||    
T  19645530 tgttttatgcttttaacatga-tgttgtgagtttgttcacatattcatccttttcatttttagcgaatttgaatttgaattgtattgatgtactctatca 19645628  T
Q  433 attcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    |||  ||||||| |||||||||||||| |||||||    
T  19645629 atttgaatgaatgaatatcgtttatttttgtcaaa 19645663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 55455279 - 55455336
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttatttctgtcaaat 468  Q
    |||||||||||||| | ||||||||  ||||||| |||||||||||||| ||||||||    
T  55455279 attgtatcaatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaat 55455336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 334 - 459
Target Start/End: Original strand, 48401431 - 48401557
Alignment:
Q  334 tgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatca 432  Q
    |||| ||||||||||||||| ||  ||| || ||||||  | ||||||| |||| ||||  ||||  |||||| ||| |||||||| ||||| | |||||    
T  48401431 tgttatatgctattaacatggatgatgtgagtttgttcacagattcatcctttttatttttagcgaatttgaatttatattgtatcgatgtactctatca 48401530  T
Q  433 attcaaatgaataaatatcgtttattt 459  Q
    |||  ||||||| ||||||||||||||    
T  48401531 atttgaatgaatgaatatcgtttattt 48401557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 459
Target Start/End: Original strand, 2192418 - 2192543
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||| || |||| |  ||||||  | ||||||| |||| ||||  ||||  |||||| ||  |||||||| ||||| | ||||||    
T  2192418 gttttatgctattaacatggatgttgtgaatttgttcacagattcatcctttttatttttagcgaatttgaatttgtattgtatcgatgtactctatcaa 2192517  T
Q  434 ttcaaatgaataaatatcgtttattt 459  Q
    ||  ||||||| ||||||||||||||    
T  2192518 tttgaatgaatgaatatcgtttattt 2192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 47733694 - 47733609
Alignment:
Q  320 cataaataatatgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcatttaagcggctttgaa 405  Q
    |||||||| | |||||||||||| ||||||||||||  |||| || ||||||| |||||| | |||||  ||| |||| |||||||    
T  47733694 cataaatactctgttgttttatgttattaacatgaacgttgtgagtttgttcgaatattcgttattttgtttttagcgactttgaa 47733609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 316 - 459
Target Start/End: Original strand, 32309817 - 32309961
Alignment:
Q  316 taggcataaataatatgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttca-tttaagcggctttgaacttacattg 414  Q
    |||||||||||| | ||| ||||||| ||||||||||| || |||| || ||||||| | ||||||| |||| | ||| | || ||||||| ||| |||     
T  32309817 taggcataaatactctgtcgttttatcctattaacatggatgttgtgagtttgttcgcagattcatcttttttatttttaacgactttgaatttatatta 32309916  T
Q  415 tatcaatgtaatatatcaattcaaatgaataaatatcgtttattt 459  Q
    |||| ||||| | ||||||||  ||||||| ||||||||||||||    
T  32309917 tatcgatgtactctatcaatttgaatgaatcaatatcgtttattt 32309961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 11734626 - 11734493
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    |||||||||||||||||||  | |||| || ||||||  ||||||||| ||||  |||  ||||  |||||| ||  |||||||| ||||| | ||||||    
T  11734626 gttttatgctattaacatggttgttgtgagtttgttcacatattcatcctttttgtttttagcgaatttgaatttgtattgtatcgatgtactttatcaa 11734527  T
Q  434 ttcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||  ||||||| |||||||||||||| |||||||    
T  11734526 tttgaatgaatgaatatcgtttatttttgtcaaa 11734493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 42781341 - 42781474
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||| || |||| || |||||   | ||||||| |||| ||||  |||| ||||||| ||  |||||||| ||| | | ||||||    
T  42781341 gttttatgctattaacatggatgttgtgagtttgttaacaaattcatcctttttatttttagcgactttgaatttgtattgtatcgatgcactctatcaa 42781440  T
Q  434 ttcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||  ||| |||||||||||||||||| |||||||    
T  42781441 tttgaataaataaatatcgtttatttttgtcaaa 42781474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 7771525 - 7771477
Alignment:
Q  411 attgtatcaatgtaatatatcaattcaaatgaataaatatcgtttattt 459  Q
    |||||||| ||||| ||||||||||  ||||||||||||||||||||||    
T  7771525 attgtatcgatgtactatatcaatttgaatgaataaatatcgtttattt 7771477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 15710865 - 15710921
Alignment:
Q  331 tgttgttttatgctattaacatgaattttgtaagcttgttcgtatattcatcatttt 387  Q
    ||||||||||||||||||||||| || |||| || ||||||| ||||||||| ||||    
T  15710865 tgttgttttatgctattaacatggatgttgtgagtttgttcgcatattcatcctttt 15710921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 3235 - 3368
Alignment:
Q  335 gttttatgctattaacatgaattttgtaagcttgttcgtatattcatcattttcattta-agcggctttgaacttacattgtatcaatgtaatatatcaa 433  Q
    ||||||||||||||||||| ||  ||| || |||||| || ||||||| ||||  |||  ||||  ||| || ||| |||||||| ||||| | ||||||    
T  3235 gttttatgctattaacatggatgatgtgagtttgttcatagattcatcctttttgtttttagcgaatttaaatttatattgtatcgatgtactctatcaa 3334  T
Q  434 ttcaaatgaataaatatcgtttatttctgtcaaa 467  Q
    ||  ||||||| |||||||||||||| |||||||    
T  3335 tttgaatgaatgaatatcgtttatttttgtcaaa 3368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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