View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1599-INSERTION-9 (Length: 725)
Name: NF1599-INSERTION-9
Description: NF1599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1599-INSERTION-9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 707; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 7 - 725
Target Start/End: Original strand, 41335224 - 41335942
Alignment:
| Q |
7 |
agttcatacaggtcaggttcaaactcaccaagctaagttaccaccaccttcagagacaaatttgaagtgtcctcgttgtgaatcaaccaatacaaaattt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41335224 |
agttcatacaggtcaggttcaaactcaccaagctaagttaccaccaccttcagagacaaatttgaagtgtcctcgttgcgaatcaaccaatacaaaattt |
41335323 |
T |
|
| Q |
107 |
tgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggggtgcattaagaaatgttcctgttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335324 |
tgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggggtgcattaagaaatgttcctgttg |
41335423 |
T |
|
| Q |
207 |
gtggagggtgtcgtagaagcaaaaagaccaaaaagagtaacacctcttctactccctccaaatctccaatatcaaatagtaatgacaaagattattcaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335424 |
gtggagggtgtcgtagaagcaaaaagaccaaaaagagtaacacctcttctactccctccaaatctccaatatcaaatagtaatgacaaagattattcaac |
41335523 |
T |
|
| Q |
307 |
aagtgcaagtgcaatccattcaacttcaactcctcttggtgaattctcacacccaactaatagacctaattacatgacatctcttcagaatctgaaccgg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335524 |
aagtgcaagtgcaatccattcaacttcaactcctcttggtgaattcttacacccaactaatagacctaattacatgacatctcttcagaatctgaaccgg |
41335623 |
T |
|
| Q |
407 |
ttcggtgttggaaatatgtttcaaattggtgattatagttcaactactggtggaggagaaggaggagttgtcgatcagtggagatttcagcagtttcctt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335624 |
ttcggtgttggaaatatgtttcaaattggtgattatagttcaactactggtggaggagaaggaggagttgtcgatcagtggagatttcagcagtttcctt |
41335723 |
T |
|
| Q |
507 |
tcatgaataatggctttgattcaagtacttcaaatgtttctttcccatttcaaagtgaaattgttgaaccaacaactacttctagggttactactttgat |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335724 |
tcatgaataatggctttgattcaagtacttcaaatgtttctttcccatttcaaagtgaaattgttgaaccaacaactacttctagggttactactttgat |
41335823 |
T |
|
| Q |
607 |
gcctgcatcggttaaatcggaacacaacggaggttttaatctgcttagatctccaatgaatatgtcagagaataacaaccattacaataattcatggaat |
706 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335824 |
gcctgcatcggttaaatcggaacacaacggaggttttaatcttcttagatctccaatgaatatgtcagagaataacaaccattacaataattcatggaat |
41335923 |
T |
|
| Q |
707 |
gattttcatggtcttgcat |
725 |
Q |
| |
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||||||||||||||||||| |
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| T |
41335924 |
gattttcatggtcttgcat |
41335942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 3946007 - 3945868
Alignment:
| Q |
71 |
aagtgtcctcgttgtgaatcaaccaatacaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttatt |
170 |
Q |
| |
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|||||||| |||||||| ||| | || ||||| |||||||||||||||||||| | ||||| ||||||||||| || || || | || | ||||||| |
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| T |
3946007 |
aagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttatt |
3945908 |
T |
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| Q |
171 |
ggacaagagggggtgcattaagaaatgttcctgttggtgg |
210 |
Q |
| |
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|||||||||| ||| | | |||||||||||||||||||| |
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| T |
3945907 |
ggacaagaggtggtactcttagaaatgttcctgttggtgg |
3945868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 3591861 - 3591904
Alignment:
| Q |
95 |
aatacaaaattttgttactacaacaactataacttgtctcaacc |
138 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
3591861 |
aataccaaattttgttactacaacaactataacaagtctcaacc |
3591904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 71 - 233
Target Start/End: Original strand, 23663558 - 23663720
Alignment:
| Q |
71 |
aagtgtcctcgttgtgaatcaaccaatacaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttatt |
170 |
Q |
| |
|
|||||||||||||| || |||||||| || |||||||| |||| ||||||||| | | | ||||||| | ||||| |||||||||||||||||||||| |
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| T |
23663558 |
aagtgtcctcgttgcgattcaaccaacactaaattttgctacttcaacaactacagcctcactcaacctcgtcacttctgcaagacatgtaggcgttatt |
23663657 |
T |
|
| Q |
171 |
ggacaagagggggtgcattaagaaatgttcctgttggtggagggtgtcgtagaagcaaaaaga |
233 |
Q |
| |
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||||||||||||||||| | ||||||||||| |||||||||||||||||||||| ||| |||| |
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| T |
23663658 |
ggacaagagggggtgcacttagaaatgttccagttggtggagggtgtcgtagaaacaacaaga |
23663720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 7435191 - 7435335
Alignment:
| Q |
69 |
tgaagtgtcctcgttgtgaatcaaccaatacaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgtta |
168 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||||||||| |||| ||||||||| | | ||||| || |||||||| |||||||| || || | || |
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| T |
7435191 |
tgaaatgtccacgttgtgaatcaaccaacacaaaattttgctacttcaacaactacagtctctctcagcccagacacttctgcaagacttgcagaaggta |
7435290 |
T |
|
| Q |
169 |
ttggacaagagggggtgcattaagaaatgttcctgttggtggagg |
213 |
Q |
| |
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||||||||||| || || |||||||||| || || |||||||| |
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| T |
7435291 |
ctggacaagaggtggcgctctaagaaatgtcccagtcggtggagg |
7435335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 22483530 - 22483394
Alignment:
| Q |
83 |
tgtgaatcaaccaatacaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggg |
182 |
Q |
| |
|
||||| |||| ||| || |||||||||||||||||||| || | | || ||||||||| | || |||||| | |||||| | |||||||| | ||| | |
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|
| T |
22483530 |
tgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattggactaaaggtg |
22483431 |
T |
|
| Q |
183 |
gtgcattaagaaatgttcctgttggtggagggtgtcg |
219 |
Q |
| |
|
|| || |||| ||||||||||||||||| |||||||| |
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| T |
22483430 |
gtacactaaggaatgttcctgttggtggggggtgtcg |
22483394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 35202317 - 35202454
Alignment:
| Q |
73 |
gtgtcctcgttgtgaatcaaccaatacaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattgg |
172 |
Q |
| |
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|||||| |||||||| ||| | || || ||||| |||||||| || ||||||| || || |||||||||||||| ||||| | |||| | |||||| |
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| T |
35202317 |
gtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgg |
35202416 |
T |
|
| Q |
173 |
acaagagggggtgcattaagaaatgttcctgttggtgg |
210 |
Q |
| |
|
|||||||| || || | ||||| |||||||||||||| |
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| T |
35202417 |
acaagaggtggaacacttagaaacgttcctgttggtgg |
35202454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 33823836 - 33823939
Alignment:
| Q |
98 |
acaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggggtgcattaagaaatg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| || | || || ||||||||||| | ||||||||||||| ||| ||||| |||||||| | |
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| T |
33823836 |
acaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaaggaggtgctttaagaaacg |
33823935 |
T |
|
| Q |
198 |
ttcc |
201 |
Q |
| |
|
|||| |
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|
| T |
33823936 |
ttcc |
33823939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 33740250 - 33740196
Alignment:
| Q |
74 |
tgtcctcgttgtgaatcaaccaatacaaaattttgttactacaacaactataact |
128 |
Q |
| |
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||||| |||||||| |||||||| || || |||||||||||||||||||| |||| |
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|
| T |
33740250 |
tgtccacgttgtgattcaaccaacactaagttttgttactacaacaactacaact |
33740196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 5211317 - 5211268
Alignment:
| Q |
74 |
tgtcctcgttgtgaatcaaccaatacaaaattttgttactacaacaacta |
123 |
Q |
| |
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||||| ||||||||||||| ||| |||||||| || |||||||||||||| |
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|
| T |
5211317 |
tgtccacgttgtgaatcaaacaacacaaaattctgctactacaacaacta |
5211268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 13481011 - 13481118
Alignment:
| Q |
69 |
tgaagtgtcctcgttgtgaatcaaccaatacaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgtta |
168 |
Q |
| |
|
|||||||||| | ||||| ||| |||| |||||||| || |||||||||||||||| ||| | ||||||||||| || ||||| |||||||| | || |
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| T |
13481011 |
tgaagtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagata |
13481110 |
T |
|
| Q |
169 |
ttggacaa |
176 |
Q |
| |
|
|||||||| |
|
|
| T |
13481111 |
ttggacaa |
13481118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 41895802 - 41895923
Alignment:
| Q |
89 |
tcaaccaatacaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggggtgcat |
188 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||||| | | || |||||||| |||||||||| || ||||| | |||||||| ||| ||| | | |
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| T |
41895802 |
tcaactaacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgtagaaggtattggactgaaggtggttctt |
41895901 |
T |
|
| Q |
189 |
taagaaatgttcctgttggtgg |
210 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
41895902 |
taagaaatgttcctgtaggtgg |
41895923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 34646001 - 34646065
Alignment:
| Q |
98 |
acaaaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtag |
162 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | ||||||||| | || ||||| |||||||| |
|
|
| T |
34646001 |
acaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtag |
34646065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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