View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15990_high_3 (Length: 313)

Name: NF15990_high_3
Description: NF15990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15990_high_3
NF15990_high_3
[»] chr6 (1 HSPs)
chr6 (1-294)||(30769193-30769486)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 30769193 - 30769486
Alignment:
Q  1 ggaatactaagagaaaagctggattgtactaaatacagcaaaaaacaagttgtaacaaactgtgagagattctttatttgcatataaggtatctcatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769193 ggaatactaagagaaaagctggattgtactaaatacagcaaaaaacaagttgtaacaaactgtgagagattctttatttgcatataaggtatctcatttt 30769292  T
Q  101 catttcatttcaaaggtaaagtcacatagaaagaggaaaaaagaataagtcacagttgaatctcaacttataggaatatcaacttctatttactctgttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30769293 catttcatttcaaaggtaaagtcacatagaaagaggaaaaaagaataagtcacagttgaatctcaacttataggaatatcaacttctatttactctgttc 30769392  T
Q  201 ctcccctgttttcactctgctatttcccttgtactaactctgtttctcccctgttttcactctgcaccaaactaagtagagtgatcagagactc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30769393 ctcccctgttttcactctgctatttcccttgtactaactctgtttctcccctgttttcactctgcaccaaactaagcagagtgatcagagactc 30769486  T

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