View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15990_high_6 (Length: 304)
Name: NF15990_high_6
Description: NF15990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15990_high_6 |
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| [»] scaffold0223 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 162 - 303
Target Start/End: Original strand, 50872707 - 50872848
Alignment:
| Q |
162 |
atgtgtagagagagtgaagaaagaaacttactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaac |
261 |
Q |
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| T |
50872707 |
atgtatagagagagtgaagaaagaaacttactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaac |
50872806 |
T |
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| Q |
262 |
gagggacttttgatcttatatactgcctctctgctcctcctc |
303 |
Q |
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| T |
50872807 |
gagggacttttgatcttatatactgcctcactgctcctcctc |
50872848 |
T |
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Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50872538 - 50872640
Alignment:
| Q |
1 |
aaaagaacctgaagatggctcttgacatgtgaaatagtgagtcctttgatatccatcaactgaagaacaagtttaggagtagcctctgccaaaaatacaa |
100 |
Q |
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| T |
50872538 |
aaaagaacctgaagatggctcttgacatgtgaaatagtgagtcctttgatatccatcaactgaagaacaagtttaggagtagcctctgccaaaaatacaa |
50872637 |
T |
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| Q |
101 |
agt |
103 |
Q |
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| T |
50872638 |
agt |
50872640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 21138 - 21219
Alignment:
| Q |
6 |
aacctgaagatggctcttgacatgtgaaatagtgagtcctttgatatccatcaactgaagaacaagtttaggagtagcctct |
87 |
Q |
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| T |
21138 |
aacctgcaaatggctcttaacatgtgaaattgttagccctttaacatccatcaactgaagaacaagtttaggagtagcctct |
21219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 21326 - 21415
Alignment:
| Q |
190 |
tactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaacgagggacttttgatctta |
279 |
Q |
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| T |
21326 |
tactttgatgaccaccaagagtttcaatggcataaacaaagcaacgatgaagttcaggtgtccatcttaaacgaggaacctttgatctta |
21415 |
T |
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