View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15990_high_7 (Length: 300)
Name: NF15990_high_7
Description: NF15990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15990_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 26860210 - 26859922
Alignment:
| Q |
1 |
ctcaccaagttaggaattcatgattaaattttcaccaagacaaagaagtgaannnnnnnn-ggtaccacaccttacctttgcaattttgtgaaaatatgg |
99 |
Q |
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| T |
26860210 |
ctcaccaagttaggaattcatgattaaattttcaccaagacaaagaagtgaattttgttttggtaccacaccttacctttgcaattttgtgaaaatatgg |
26860111 |
T |
|
| Q |
100 |
agtatttctatcaccctcaatgtgccacttaactttagcattttcctgccaaaactattccccaaattttacagccttgtcaaattcaatcatagcaagt |
199 |
Q |
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| T |
26860110 |
agtatttctatcaccctcaatgtgccacttaactttagcattttcctaccaaaactattcctcaaatttaacagccttgtcaaattcaatcatagcaagt |
26860011 |
T |
|
| Q |
200 |
ttctcttggtccataagtgaatccgaaaaacctatcgtagaaatttgattttggatagattccgtatttgatgcagccactttgatttt |
288 |
Q |
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| T |
26860010 |
ttctcctggtccataagtgaatccgaaaaacctatcgtagaaatttgattttggatagattccgtatttgatgcagccactttgatttt |
26859922 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 14142499 - 14142552
Alignment:
| Q |
101 |
gtatttctatcaccctcaatgtgccacttaactttagcattttcctgccaaaac |
154 |
Q |
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||||| |||||||| ||| ||||||| ||||||||||| || |||||||||||| |
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| T |
14142499 |
gtattcctatcaccatcagtgtgccagttaactttagccttctcctgccaaaac |
14142552 |
T |
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