View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15991_low_1 (Length: 508)
Name: NF15991_low_1
Description: NF15991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15991_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Original strand, 38272442 - 38272938
Alignment:
| Q |
7 |
agcagagagggagaaagacaggagtgataaaaggagaaaaatgaatgaatatattattgcaccgatggtttttgggacttggccattttatttagtagan |
106 |
Q |
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| T |
38272442 |
agcagagagggagaaagacaggagtgataaaaggagaaaaatgaatgaatatattattgcaccgatggtttttgggacttggccattttatttagtagat |
38272541 |
T |
|
| Q |
107 |
nnnnnnnn--caacatgaaaagtttgatctaggtgggacccattgttaattatttaactcaaattcttatatgatttgtgtttgtgtgtgaatgtttgtt |
204 |
Q |
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| T |
38272542 |
ttttttttttcaacatgaaaagtttgatctaggtgggacccattgttaattatttaactcaaattcttatatgatttgtgtttgtgtgtgaatgtttgtt |
38272641 |
T |
|
| Q |
205 |
atcacggtgaatttgtctgaattgttgtagctttttataagatcgcgatgatggttggtagtggtttattgtaattctaacaaatatatcaattgtgata |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||| |||||||||||||| |
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| T |
38272642 |
atcacggtgaatttgtctgaattgttgtagctttttataagatcacgatgatggtaggtggtggttcattgtaattctaacaaatctatcaattgtgata |
38272741 |
T |
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| Q |
305 |
tcaaatatgaattgttgacaatgtgatgtttgcgagtaacatgtaatcagctttggaagtgatctgtcaaggtttttattagctctttatattcaatctt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
38272742 |
ccaaatatgaattgttgacaatgtgatgtttgcgagtaacatgtaatcagctttggaaatgatctgtcaaggtttttgttagctctttatattcaatctt |
38272841 |
T |
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| Q |
405 |
atctaaggagctaaaattacggtactttattgtaattatagcaaattcattgtgatatcaaacatacaccgaatctttgttgacaatatgatgatgt |
501 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38272842 |
atctaaggagctaaaattgcggtagtttattgtaattatagcaaattcattgtgatatcaaacatacaccgaatctttgttgacaatatgatgatgt |
38272938 |
T |
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