View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15991_low_2 (Length: 425)
Name: NF15991_low_2
Description: NF15991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15991_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 1349312 - 1349723
Alignment:
| Q |
1 |
ctttaggagcatttttcctcccagaaacaccaaacagcataatccaaaacagcaaaaaccatcaaaaagctaagttaatgctgcaatccataagaggcac |
100 |
Q |
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| T |
1349312 |
ctttaggagcatttttccttccagaaacaccaaacagcataattcaaaacagcaaaaaccatcaaaaagctaagttaatgctgcaatcaataagaggcac |
1349411 |
T |
|
| Q |
101 |
acatgatgttcaacaagaatttgaggaccttattgaagcaagtatcatgtcaaattctatcaaacatccatttaagaatatcttacaaagaaaatataga |
200 |
Q |
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| T |
1349412 |
acatgatgttcaacaagaatttgaggaccttattgaagcaagtatcatgtcaaattctatcaaacatccatttaagaatatcttacaaagaaaatataga |
1349511 |
T |
|
| Q |
201 |
cctcaacttgttatggcaatagctataccttttttccaacaattcacaggaatcaatgtcatttccttttatgctccaatcctatttttaaccattggat |
300 |
Q |
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| T |
1349512 |
cctcaacttgttatggcaatagctataccttttttccaacaattcacaggaatcaatgtcatttccttttatgctccaatcctatttttaaccattggat |
1349611 |
T |
|
| Q |
301 |
taggtgaaagtgcttcacttttatctgcagttatggtagggattgtaggtactacttcaacattcatatcaatgctcatagttgataaactaggtagaag |
400 |
Q |
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| T |
1349612 |
taggtgaaagtgcttcacttttatctgcagttatggtagggattgtaggtactacttcaacattcatatcaatgctcatagttgataaactaggtagaag |
1349711 |
T |
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| Q |
401 |
agttttgttcat |
412 |
Q |
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| T |
1349712 |
agttttgttcat |
1349723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 391
Target Start/End: Original strand, 1356455 - 1356659
Alignment:
| Q |
187 |
aaagaaaatatagacctcaacttgttatggcaatagctataccttttttccaacaattcacaggaatcaatgtcatttccttttatgctccaatcctatt |
286 |
Q |
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| T |
1356455 |
aaagaagatatagacctcaacttgtaatggcaatagcaataccatttttccaacaagtgacagggatcaatgtcatcgctttctatgcccctttactttt |
1356554 |
T |
|
| Q |
287 |
tttaaccattggattaggtgaaagtgcttcacttttatctgcagttatggtagggattgtaggtactacttcaacattcatatcaatgctcatagttgat |
386 |
Q |
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| T |
1356555 |
cagaacaattgggttaggagaaagtgcatcgcttctatcatctgtcatgacaggcatagtaggtactggttcaacgttcatatcaatgttcatagtagat |
1356654 |
T |
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| Q |
387 |
aaact |
391 |
Q |
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||||| |
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| T |
1356655 |
aaact |
1356659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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