View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15991_low_3 (Length: 412)

Name: NF15991_low_3
Description: NF15991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15991_low_3
NF15991_low_3
[»] chr2 (23 HSPs)
chr2 (19-405)||(30383654-30384040)
chr2 (19-193)||(30393997-30394169)
chr2 (233-405)||(30393805-30393977)
chr2 (20-119)||(30436363-30436462)
chr2 (18-119)||(30424112-30424213)
chr2 (18-128)||(30475225-30475335)
chr2 (18-119)||(30468105-30468206)
chr2 (18-128)||(8380135-8380245)
chr2 (18-111)||(30430153-30430246)
chr2 (18-119)||(30482837-30482938)
chr2 (18-144)||(23784317-23784443)
chr2 (233-306)||(30482149-30482222)
chr2 (238-334)||(30429870-30429966)
chr2 (238-306)||(30423865-30423933)
chr2 (238-305)||(30467860-30467927)
chr2 (235-304)||(8381668-8381737)
chr2 (237-305)||(30436070-30436138)
chr2 (18-144)||(23767636-23767762)
chr2 (235-301)||(23767286-23767352)
chr2 (235-301)||(23784775-23784841)
chr2 (18-144)||(23796805-23796931)
chr2 (238-304)||(30474988-30475054)
chr2 (265-301)||(23796479-23796515)
[»] chr5 (2 HSPs)
chr5 (235-405)||(41628725-41628895)
chr5 (18-129)||(41628402-41628513)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 30384040 - 30383654
Alignment:
Q  19 catcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384040 catcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaact 30383941  T
Q  119 tatgaagaaagccggggtcataatctgttgtatattcataaagaaatgactcaagacttcaaatttccagtcaaattcatataaattaacttataatcta 218  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30383940 tgtgaagaaagccggggtcataatctgttgtatattcataaggaaatgacttaagacttcaaatttccagtcaaattcatataaactaacttataatcta 30383841  T
Q  219 taacttgatatatcactaaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30383840 taacttgatatatcactaaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtg 30383741  T
Q  319 cattagctagtaacttgaaaatcttataattagtctttgggaattcagacatcttgtttaacacatcttttatttgcacaggttctg 405  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  30383740 cattagctagtaacttgaaaatcttgtaattaggctttgggaattcagacatcttgttcaacacatcttttatttgctcaggttctg 30383654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 30394169 - 30393997
Alignment:
Q  19 catcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaact 118  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  30394169 catcacttgccaaattctgcagggaaggccatacgtctatttcacatgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaact 30394070  T
Q  119 tatgaagaaagccggggtcataatctgttgtatattcataaagaaatgactcaagacttcaaatttccagtcaaa 193  Q
    | |||||||||||||||||||||||||| |||| ||||||||||||||||| || | ||||||||||||||||||    
T  30394069 tgtgaagaaagccggggtcataatctgtcgtat-ttcataaagaaatgact-aaaaattcaaatttccagtcaaa 30393997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 233 - 405
Target Start/End: Complemental strand, 30393977 - 30393805
Alignment:
Q  233 actaaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtgcattagctagtaac 332  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||  || |||||||||||    
T  30393977 actaaccttcaattgttctaaatggaaagcagggttgattagccttctatgcttgctccatttttctcccccataactagcaagaccactagctagtaac 30393878  T
Q  333 ttgaaaatcttataattagtctttgggaattcagacatcttgtttaacacatcttttatttgcacaggttctg 405  Q
    |||||||||||||| |||||||||||||| |||||||| ||||| || ||||||||||||||| |||||||||    
T  30393877 ttgaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctg 30393805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 30436462 - 30436363
Alignment:
Q  20 atcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaactt 119  Q
    |||||| ||||||||||| ||| |||||||||  || |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  30436462 atcactggccaaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcaaatcatcgcaactt 30436363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 30424213 - 30424112
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||| ||||||||||| ||| |||||||||  || |||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||    
T  30424213 acatcactcgccaaattttgaaggaaaggccatacgtccatttcacatgatccatctgaagccaacattttctcccatttgctaatcagatcatcgcaac 30424114  T
Q  118 tt 119  Q
    ||    
T  30424113 tt 30424112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 30475335 - 30475225
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||| ||||||||||| ||| ||||||| | ||| | |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||  ||||    
T  30475335 acatcactcgccaaattttgaaggaaaggccaaacatccaattcacatgatccatctgatgacaacattctctcccatttggtaatcaaatcatcacaac 30475236  T
Q  118 ttatgaagaaa 128  Q
    || ||||||||    
T  30475235 ttttgaagaaa 30475225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 30468206 - 30468105
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||| || |||||||| ||| |||||||||  || |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||    
T  30468206 acatcactggcaaaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcagatcatcgcaac 30468107  T
Q  118 tt 119  Q
    ||    
T  30468106 tt 30468105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 8380135 - 8380245
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||||| |||||| || |||||||||||||| |||||||||| |||||||||||| |||||| ||  |||||||||| |||||| |||| ||||||    
T  8380135 acatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgatgacaacgttgactcccatttgctaatcatatcaatgcaac 8380234  T
Q  118 ttatgaagaaa 128  Q
    || ||| ||||    
T  8380235 ttgtgaggaaa 8380245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 30430246 - 30430153
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcat 111  Q
    ||||| ||||| |||||||| ||| |||||||||  || |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  30430246 acatctcttgctaaattttgaaggaaaggccatacttccatttcacatgatccatctgaagccaacattttctcccatttgctaatcagatcat 30430153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 30482938 - 30482837
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||| ||||||||||| | ||||||||||| ||| |||||||||||||||||| | || ||||||  |||||||||| |||||| |||||||||||    
T  30482938 acatcactagccaaattttgaatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttgctaatcatatcattgcaac 30482839  T
Q  118 tt 119  Q
    ||    
T  30482838 tt 30482837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 23784317 - 23784443
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||||| |||  | || |||||||||||||  || |||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||| |    
T  23784317 acatcacttgtcaagctctgaagggaaggccatacgtccatttcacatgatccatttgaagacaacattttttcccaattgctaatcaaatcattgcagc 23784416  T
Q  118 ttatgaagaaagccggggtcataatct 144  Q
    || | ||||| |  || ||||||||||    
T  23784417 ttttcaagaatgttggtgtcataatct 23784443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 30482222 - 30482149
Alignment:
Q  233 actaaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcat 306  Q
    |||||||||||| |||||||||||||| ||||| || |||| |||||||||||||||||||||||| |||||||    
T  30482222 actaaccttcaatttttctaaatggaatgcaggatttattatctttctatgcttgctccacttttcaccctcat 30482149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 30429966 - 30429870
Alignment:
Q  238 ccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtgcattagctagtaactt 334  Q
    ||||||| ||||||| |||||| ||||||||||| | |||||| ||||||||||||| ||||||||||| | | |||||  ||||||||||||||||    
T  30429966 ccttcaatttttctacatggaatgcagggttgataatctttctgtgcttgctccactgttctccctcatgacttgcaaggccattagctagtaactt 30429870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 30423933 - 30423865
Alignment:
Q  238 ccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcat 306  Q
    ||||||| |||||||||||||| ||||||||||| | |||||| ||||||||||||| |||||||||||    
T  30423933 ccttcaatttttctaaatggaatgcagggttgataatctttctgtgcttgctccactgttctccctcat 30423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 30467927 - 30467860
Alignment:
Q  238 ccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctca 305  Q
    ||||||| |||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||||||||||    
T  30467927 ccttcaatttttctaaatggaatgcaggattgattatctttctgtgcttgctccactgttctccctca 30467860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 8381668 - 8381737
Alignment:
Q  235 taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctc 304  Q
    |||||||||| |||||||| |||||||||| ||| |||| | |||||||||| |||||||||||||||||    
T  8381668 taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctc 8381737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 30436138 - 30436070
Alignment:
Q  237 accttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctca 305  Q
    |||||||| |||||||||||||| ||||| || |||| |||||| ||||||||||||| ||||||||||    
T  30436138 accttcaatttttctaaatggaatgcaggatttattatctttctgtgcttgctccactgttctccctca 30436070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 23767762 - 23767636
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||||| |||  | || |||||||||||||| ||||||||| | ||||||| |||||||||| |||  ||||| ||| |||||||||| ||||| |    
T  23767762 acatcacttgtcaagctctgaagggaaggccatatgtctatttcagaggatccatttgaagacaacgtttcttcccaattgctaatcaaatcgttgcagc 23767663  T
Q  118 ttatgaagaaagccggggtcataatct 144  Q
    || | ||||| |  || ||||||||||    
T  23767662 ttttcaagaatgttggtgtcataatct 23767636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 23767352 - 23767286
Alignment:
Q  235 taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctcc 301  Q
    |||||||||| ||||| |  || |||||||||||||||| | ||||||||||| |||||||||||||    
T  23767352 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttggtccacttttctcc 23767286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 23784775 - 23784841
Alignment:
Q  235 taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctcc 301  Q
    |||||||||| ||||| |  || || |||||||||||||   |||||||||||||||||||||||||    
T  23784775 taaccttcaatttttccatgtgaaacgcagggttgattattcttctatgcttgctccacttttctcc 23784841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 23796931 - 23796805
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||||| |||  | || |||||||||||||| ||||||||| | | ||||  |||||||||| |||  ||||| ||| |||||||||| ||||| |    
T  23796931 acatcacttgtcaagctctgaagggaaggccatatgtctatttcagaggctccacttgaagacaacgtttcttcccaattgctaatcaaatcgttgcagc 23796832  T
Q  118 ttatgaagaaagccggggtcataatct 144  Q
    || | ||||| |  || ||||||||||    
T  23796831 ttttcaagaatgttggtgtcataatct 23796805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 30475054 - 30474988
Alignment:
Q  238 ccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctc 304  Q
    ||||||| ||||||| || ||| || || || ||||||||||| ||||||||||||||||| |||||    
T  30475054 ccttcaatttttctatattgaatgccggattaattagctttctgtgcttgctccacttttcgccctc 30474988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 23796515 - 23796479
Alignment:
Q  265 ggttgattagctttctatgcttgctccacttttctcc 301  Q
    ||||||||| | |||||||||||||||||||||||||    
T  23796515 ggttgattatccttctatgcttgctccacttttctcc 23796479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 235 - 405
Target Start/End: Original strand, 41628725 - 41628895
Alignment:
Q  235 taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtgcattagctagtaactt 334  Q
    |||||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||  | | |||||  || || ||||||||||    
T  41628725 taaccttcaatttttctgaatggaaagcggggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt 41628824  T
Q  335 gaaaatcttataattagtctttgggaattcagacatcttgtttaacacatcttttatttgcacaggttctg 405  Q
    ||||||||||| |||| ||||||| || ||||| || ||||| || |||||| | |||||| |||||||||    
T  41628825 gaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgctcaggttctg 41628895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 41628402 - 41628513
Alignment:
Q  18 acatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaac 117  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  |||| ||||| |||||||    
T  41628402 acatcactcgccaaattctgaagggaaggccatatatctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaac 41628501  T
Q  118 ttatgaagaaag 129  Q
    || |||||||||    
T  41628502 ttgtgaagaaag 41628513  T

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