View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15992_high_10 (Length: 296)
Name: NF15992_high_10
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15992_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 21470073 - 21470349
Alignment:
| Q |
7 |
tccaagaatatacattcagattcagacac--aaatttgagtttttccatatattccatcttttcacggacacttcagattgaagacatgtccagtaagtg |
104 |
Q |
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| T |
21470073 |
tccaaaaacatacattcagattcagacacacaaatttgagtttttccatatattccatcttttcacggacacttcagattgaagacatgtccagtatgtg |
21470172 |
T |
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| Q |
105 |
acaactgacaacacataattacattcaattactcgacaccaacacatataattacattcaattactcaa--tatcatatacctcggggtccgagagtaag |
202 |
Q |
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| T |
21470173 |
acaactgacaacacataattacattcaattactcgacaccaacacatataattacattcaattactcaaattatcatatacctcggggtccgagagtaag |
21470272 |
T |
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| Q |
203 |
gccaacagcatcagcaagtttatcaattccagcctgcatagcacggcgtgaatcttggtcaaaggcaatatctttag |
279 |
Q |
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| T |
21470273 |
gccaacagcatcagcaagtttatcaattccagcctgcatagcacggcgtgaatcttggtcaaaggcaatatctttag |
21470349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 7422222 - 7422194
Alignment:
| Q |
138 |
cgacaccaacacatataattacattcaat |
166 |
Q |
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| T |
7422222 |
cgacaccaacacatataattacattcaat |
7422194 |
T |
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