View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15992_high_5 (Length: 366)
Name: NF15992_high_5
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15992_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 35448537 - 35448791
Alignment:
| Q |
1 |
gtagctttgcttgtgagaggtggaaatattacttatgttgaga------ataaaattagaatgaaaaattaatacttacttcattgaaaacctaaaatca |
94 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
35448537 |
gtagctttgcttgttagaggtggaaatattacttatgttgagattgagaataaaattagaatgaaaaattaattctt----cattgaaaacctaaaatca |
35448632 |
T |
|
| Q |
95 |
cttaatattatataaataaatagccgctctcatcaacttagtctctaaaccattaaaaacagctcaaatatctttaaactatattct--tataccaacaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| | ||||||||||| |
|
|
| T |
35448633 |
cttaatattatataaataaatagccgctctcatcaacttagtctctaaaccattaaaaacagttcaaacgtctttaaactgtatttttatataccaacaa |
35448732 |
T |
|
| Q |
193 |
tttgattctaaatcaactaactaaaggatagattaatatgacaatctaatttaagagaa |
251 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
35448733 |
tttgattttaaatcaactaactgaatgatagattaatatgacaatctaatttaagagaa |
35448791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 350
Target Start/End: Original strand, 35448859 - 35448890
Alignment:
| Q |
319 |
caccgtttaatctacaacatattatataaatt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35448859 |
caccgtttaatctacaacatattatataaatt |
35448890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University