View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15992_high_6 (Length: 365)
Name: NF15992_high_6
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15992_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 37358583 - 37358877
Alignment:
| Q |
18 |
ataatttacattacaacgatagcaacacaaaaccagctgaacctgctatggccaatcgggaagataaatgaaga---tcatggagtgatggaacaatcga |
114 |
Q |
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| T |
37358583 |
ataatttacattacaacgatagcaacacaaaaccagctgaacctgctatggccaatcgggaagataaatgaagaagatcatggagtgatggaacaatcga |
37358682 |
T |
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| Q |
115 |
gatgacaaattgaaggaaatgaaagtgtg--gactaaagagatatatgttggtaaatgaaaaatatgagggaataacacatagcattcacaaatatgctt |
212 |
Q |
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| T |
37358683 |
gatgacaaattgaaggaaatgaaagtgtgtagactaaagagatatatgttggtaaatgaaaaatatgagggaataacacatagcattcacaaatatgctt |
37358782 |
T |
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| Q |
213 |
caggcatgattgaaatatgctgtcactatatcttcctaaaatgcttcatatcaacatatacttggaggacattaatttttgtctcatttgatgcatag |
310 |
Q |
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| T |
37358783 |
caggcatgattgaaatatgctatcactatatcttcctaaaatgcttcatat---catatacttggaggacattaatttttgtctcatttgatgcatag |
37358877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 3597243 - 3597289
Alignment:
| Q |
21 |
atttacattacaacgatagcaacacaaaaccagctgaacctgctatg |
67 |
Q |
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| T |
3597243 |
atttacattccaaagatagcaacacaaaaccagttgaacatgctatg |
3597289 |
T |
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