View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15992_high_9 (Length: 344)
Name: NF15992_high_9
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15992_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 37293152 - 37293467
Alignment:
| Q |
16 |
agcttcattacttggggagttctcattgtttacactaccaccaacataggcttcctttgaattctgttcaagatttgtaaaatgtgattcatcctccgag |
115 |
Q |
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| T |
37293152 |
agcttcattacttggggagttctcattgtttacactaccaccaacataggcttcctttgaattatgttcaagatttgtaaaatgtgattcatcctcagag |
37293251 |
T |
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| Q |
116 |
tccaaagtttcgctgtcgactctggcggtagattcgtgtatgatcgatttcccaattgcatctctttctatagtagatagatcagcgtcagaattttgtg |
215 |
Q |
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| T |
37293252 |
tccaaagtttcgctgtcgactctggcggtagattcgtgtatgatcgatttcccaattgcatctctttctatagtagatacatcagcgtcagaattttgtg |
37293351 |
T |
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| Q |
216 |
caccagaatttaatggcatctctggtttcagccccttcagatagctacaagttttaattgaatgggagtacgaggagactagtacgtttatagacttggc |
315 |
Q |
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| T |
37293352 |
caccagaatttaatggcatctctggtttcagccccttcagatagctacaagttttaattgaatgggagtacgaggagactagtacatttatagccttggc |
37293451 |
T |
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| Q |
316 |
aaccacaggcacaggt |
331 |
Q |
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| T |
37293452 |
aaccacaggcacaggt |
37293467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 48306649 - 48306736
Alignment:
| Q |
143 |
gtagattcgtgtatgatcgatttcccaattgcatctctttctatagtagatagatcagcgtcagaattttgtgcaccagaatttaatg |
230 |
Q |
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| T |
48306649 |
gtagattcatgtatgatcgatttttcaactgcatatttttctatagcagatacatgagcatcagcattttgtgcaccagaatctaatg |
48306736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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