View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15992_low_1 (Length: 773)
Name: NF15992_low_1
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15992_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 743; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 1 - 751
Target Start/End: Original strand, 29332874 - 29333624
Alignment:
| Q |
1 |
aacgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgc |
100 |
Q |
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| T |
29332874 |
aacgtaactaaatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgc |
29332973 |
T |
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| Q |
101 |
atacatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcccgataagtccattccaa |
200 |
Q |
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| T |
29332974 |
atacatctgttctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcccgataagtccattccaa |
29333073 |
T |
|
| Q |
201 |
gatactcccaaacacaagatcaaaattcccttgattcaaccaaaatgctctctcattcgcaacatccaccggtattaccgttaacaacaaaagccctttc |
300 |
Q |
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| T |
29333074 |
gatactcccaaacacaagatcaaaattcccttgattcaaccaaaatgctctctcattcgcaacatccaccggtattaccgttaacaacaaaagccctttc |
29333173 |
T |
|
| Q |
301 |
ttattttccgattgcacttcactggaaaaacaagcgagaacatactcaagaagctccacccaaccaccaagagaacaccggtaaaacctatcagcaagta |
400 |
Q |
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| T |
29333174 |
ttattttccgattgcacttcactggaaaaacaagcgagaacatactcaagaagctccacccaaccaccaagagaacaccggtaaaacctatcagcaagta |
29333273 |
T |
|
| Q |
401 |
aaccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaatgaagaagaggattcttcagttcgagtaagataatagaatt |
500 |
Q |
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| T |
29333274 |
aaccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaatgaagaagaggattcttcagttcgagtaagataatagaatt |
29333373 |
T |
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| Q |
501 |
gaaaggaccgttaattccttcgggaagaacttgaagaagatgattaacggtttcgattctcgtttgaatcggaggttgaaattctagaagctttgcaagt |
600 |
Q |
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| T |
29333374 |
gaaaggaccgttaattccttcgggaagaacttgaagaagatgattaacggtttcgattctcgtttgaatcggaggttgaaattctagaagctttgcaagt |
29333473 |
T |
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| Q |
601 |
ttcaaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaa |
700 |
Q |
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| T |
29333474 |
ttcaaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaa |
29333573 |
T |
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| Q |
701 |
gcaatgaaagatcgttggattgaagaatcgtttcgacgtgttgttgaagtt |
751 |
Q |
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| T |
29333574 |
gcgatgaaagatcgttggattgaagaatcgttgcgacgtgttgttgaagtt |
29333624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 29321724 - 29321862
Alignment:
| Q |
45 |
ctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcatacatctgttctcttaagctcctgcgacaataacatcaacgaa |
144 |
Q |
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| T |
29321724 |
ctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctgaagatccttcgacaataacatcaacgaa |
29321823 |
T |
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| Q |
145 |
attgatgcattgtatgccaatcccttcaattccttatcc |
183 |
Q |
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| T |
29321824 |
agtgatgcagtgaatgccaatgctttcaattcctgatcc |
29321862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 460
Target Start/End: Original strand, 29322059 - 29322142
Alignment:
| Q |
377 |
accggtaaaacctatcagcaagtaaaccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaat |
460 |
Q |
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| T |
29322059 |
accggtacaacctgtcagcgaataaacccatcatttcgcatagcgaaggaaacagaatttcttcagattctaccttgagcgaat |
29322142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 646
Target Start/End: Original strand, 29296005 - 29296069
Alignment:
| Q |
582 |
ttctagaagctttgcaagtttcaaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaa |
646 |
Q |
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| T |
29296005 |
ttctagaagtttcgcgagcttgaaagcgaatgcgttagggtaatgatgagcgagggatttgaaaa |
29296069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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