View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15992_low_3 (Length: 519)

Name: NF15992_low_3
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15992_low_3
NF15992_low_3
[»] chr6 (1 HSPs)
chr6 (16-512)||(6685251-6685747)
[»] chr2 (1 HSPs)
chr2 (46-202)||(15515127-15515284)
[»] chr8 (2 HSPs)
chr8 (209-312)||(18768007-18768110)
chr8 (50-123)||(45354974-45355047)
[»] chr3 (3 HSPs)
chr3 (216-312)||(13850544-13850639)
chr3 (50-123)||(2551331-2551404)
chr3 (50-123)||(13847157-13847230)
[»] chr4 (1 HSPs)
chr4 (50-120)||(1153428-1153498)
[»] chr5 (3 HSPs)
chr5 (56-123)||(23760666-23760733)
chr5 (56-123)||(23826127-23826194)
chr5 (50-123)||(17039231-17039304)
[»] chr1 (2 HSPs)
chr1 (16-48)||(51759851-51759883)
chr1 (50-81)||(29277648-29277679)


Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 6685251 - 6685747
Alignment:
Q  16 agttatgttattagaatttgaacacaataggaattcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  6685251 agttatgttattagaatttgaacacaataggaattcggcggattctcaagcatatcatgatccttctcaactttgatttttttggccttgtgttcttttg 6685350  T
Q  116 acttgctaccttggtattcagtttaaaaatatagagtgagtattcaatttagctacccaaacaaatggaactttgctacccagtcattctacacttctac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6685351 acttgctaccttggtattcagtttaaaaatatagagtgagtattcaatttagctacccaaacaaatggaactttgctacccagtcattctacacttttac 6685450  T
Q  216 ataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgatcaacaac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6685451 ataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactaatcaacaac 6685550  T
Q  316 aacttcatgtttgaggattggaggtaaccctctgccatccataatagaaccaactcgttcttttcgatttcataacacttgggattcaaagagcaatagg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6685551 aacttcatgtttgaggattggaggtaaccctctgccatccataatagaatcaactcgttcttttcgatttcataacacttgggattcaaagagcaatagg 6685650  T
Q  416 cgaaacattgcttcaatgggtgcgaaaggtcttggtaactccgtcttagagaggacatgatacaattcttctcttcacccatactccagatgtctct 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6685651 cgaaacattgcttcaatgggtgcgaaaggtcttggtaactccgtcttagagaggacatgatacaattcttctcttcacccatactccagatgtctct 6685747  T

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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 15515127 - 15515284
Alignment:
Q  46 gaattcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgctaccttggtattcagtttaaaaat 145  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||       ||||||||||||||||| |||| |||||||||||| |||||||||||    
T  15515127 gaattcggcagattctcaagtatatcatgatccttctcaactttgaattttttggccttgtgttcttttggcttggtaccttggtatttagtttaaaaat 15515226  T
Q  146 atagagtgagtattcaatttagctacccaaa-caaatggaactttgctacccagtcat 202  Q
    ||| ||||||||||  ||||||||||||||| |||||||||||||||| || ||||||    
T  15515227 ataaagtgagtatttgatttagctacccaaatcaaatggaactttgcttcctagtcat 15515284  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 18768007 - 18768110
Alignment:
Q  209 cttctacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgat 308  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  18768007 cttctacataatcaaactaaattattttctgcataatcaaacaaccaaatatttaaaaagtataaacgagtaccggttaatttcttttgtatatactgat 18768106  T
Q  309 caac 312  Q
    ||||    
T  18768107 caac 18768110  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 45355047 - 45354974
Alignment:
Q  50 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||    
T  45355047 tcggcggattctcaagcatatcatgatccttctcaactttgatttttttggcctggtgttcttttgacttgcta 45354974  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 13850544 - 13850639
Alignment:
Q  216 ataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgatcaac 312  Q
    ||||||||||||||||||||| | |||||| |||||||  || |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  13850544 ataatcaaactaaattatttt-tgcataattaaacaacctaatatttaaaaagtataaacgagtaccagttaatttcttttgtatatactgatcaac 13850639  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 2551331 - 2551404
Alignment:
Q  50 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||    
T  2551331 tcggcggattctcaagcatatcatgatccttctcaactttgatttttttggcctggtgttcttttgacttgcta 2551404  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 13847157 - 13847230
Alignment:
Q  50 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||    
T  13847157 tcggcggattctcaagcatatcatgatccttctcaactttgatttttttggccttgtgttcttttggcttgcta 13847230  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 1153428 - 1153498
Alignment:
Q  50 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||    
T  1153428 tcggcggattctcaagcatatcatgatccttctcaactttgatttttttggccttgcgttcttttgacttg 1153498  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 23760733 - 23760666
Alignment:
Q  56 gattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 123  Q
    |||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||    
T  23760733 gattctcaagcatatcataatccttctcaactttgatttttttggccttgtgttcttttgacttgcta 23760666  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 23826194 - 23826127
Alignment:
Q  56 gattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 123  Q
    |||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||    
T  23826194 gattctcaagcatatcataatccttctcaactttgatttttttggccttgtgttcttttgacttgcta 23826127  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 17039231 - 17039304
Alignment:
Q  50 tcggcggattctcaagcatatcatgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgcta 123  Q
    ||||| |||| |||| ||||||||||||||||||||||||||       ||||||||||||| |||||||||||    
T  17039231 tcggcagattttcaaacatatcatgatccttctcaactttgatttttttggccttgtgttctcttgacttgcta 17039304  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 51759851 - 51759883
Alignment:
Q  16 agttatgttattagaatttgaacacaataggaa 48  Q
    |||||||||||||||||||||||||||||||||    
T  51759851 agttatgttattagaatttgaacacaataggaa 51759883  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 29277679 - 29277648
Alignment:
Q  50 tcggcggattctcaagcatatcatgatccttc 81  Q
    ||||||||||||||||||||||||||||||||    
T  29277679 tcggcggattctcaagcatatcatgatccttc 29277648  T

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