View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15992_low_4 (Length: 443)

Name: NF15992_low_4
Description: NF15992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15992_low_4
NF15992_low_4
[»] chr7 (6 HSPs)
chr7 (144-324)||(4873721-4873901)
chr7 (319-433)||(4866413-4866527)
chr7 (17-105)||(4873897-4873985)
chr7 (192-345)||(1751556-1751706)
chr7 (197-331)||(6531857-6531991)
chr7 (200-273)||(8235825-8235897)
[»] chr1 (4 HSPs)
chr1 (193-351)||(3362920-3363075)
chr1 (249-345)||(7839907-7840003)
chr1 (236-317)||(15421775-15421855)
chr1 (192-329)||(26290055-26290193)
[»] chr3 (3 HSPs)
chr3 (324-433)||(6461920-6462029)
chr3 (200-280)||(6462026-6462106)
chr3 (236-300)||(17576600-17576664)
[»] chr4 (5 HSPs)
chr4 (242-433)||(36709123-36709314)
chr4 (212-345)||(17465491-17465622)
chr4 (200-305)||(17295074-17295178)
chr4 (200-302)||(11376848-11376948)
chr4 (200-302)||(29367715-29367815)
[»] chr5 (3 HSPs)
chr5 (192-345)||(4237280-4237432)
chr5 (199-299)||(19222611-19222713)
chr5 (193-296)||(20685648-20685748)
[»] chr2 (4 HSPs)
chr2 (195-341)||(21515703-21515848)
chr2 (193-306)||(21511287-21511401)
chr2 (286-427)||(35406946-35407088)
chr2 (193-231)||(23483156-23483194)
[»] scaffold0148 (1 HSPs)
scaffold0148 (236-337)||(13164-13265)
[»] chr8 (2 HSPs)
chr8 (193-267)||(9797777-9797852)
chr8 (195-267)||(42698335-42698406)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 144 - 324
Target Start/End: Complemental strand, 4873901 - 4873721
Alignment:
Q  144 gtgaacttttttccccaggacaagccatagaagtggttagcgaacacattgatacgaatccgcaagtgtacggttctattgagtagtacaagaatatcgt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873901 gtgaacttttttccccaggacaagccatagaagtggttagcgaacacattgatacgaatccgcaagtgtacggttctattgagtagtacaagaatatcgt 4873802  T
Q  244 tccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagt 324  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873801 tctacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagt 4873721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 319 - 433
Target Start/End: Complemental strand, 4866527 - 4866413
Alignment:
Q  319 aatagtttctttgtttaaattcagattttataaagaagccttaggattgttgttagatcttaacgataaatactaacaattccaagtctatatctctatc 418  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4866527 aatagtttctttgtttaaattcagattttataaagtagccttaggattgttgttagatcttaacgataaatactaacaattccaagtctatatctctatc 4866428  T
Q  419 ttatgttaaattcat 433  Q
    |||||||||||||||    
T  4866427 ttatgttaaattcat 4866413  T

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Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 4873985 - 4873897
Alignment:
Q  17 atcattatgaactatatgtagaaactttaatcattatgaaccataagtaattgctatatcatagaaattacaaatgtttgattagtgaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873985 atcattatgaactatatgtagaaactttaatcattatgaaccataagtaattgctatatcatagaaattacaaatgtttgattagtgaa 4873897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 192 - 345
Target Start/End: Complemental strand, 1751706 - 1751556
Alignment:
Q  192 ttgatacgaatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgatta 291  Q
    |||||| ||||||||||| ||| |||||||| |||||||| |||  |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  1751706 ttgatatgaatccgcaagcgtatggttctatcgagtagtaaaag--tatcgttccacagagagttattgtaattaccgatttcgttttcaatgttgatta 1751609  T
Q  292 gctgaaaagattaagtattaaaagttcaatagtttctttgtttaaattcagatt 345  Q
    || |||||||| |||| ||| ||||  ||||||||||| ||| |||||||||||    
T  1751608 gcagaaaagatcaagt-ttagaagtcgaatagtttcttggttaaaattcagatt 1751556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 6531991 - 6531857
Alignment:
Q  197 acgaatccgcaagtgtacggttct-attgagtagtacaagaatatcgttccacagagagttat-tgtaattacagatttcgttttcaatgatgattagct 294  Q
    ||||||||||||| |||||||||| || |||||||| ||  ||||||| |||||  ||||| | ||||||||| |||||  |||||||| ||||||||||    
T  6531991 acgaatccgcaagcgtacggttcttatcgagtagtaaaa--atatcgt-ccacaaggagttgtatgtaattaccgattttcttttcaattatgattagct 6531895  T
Q  295 gaaaagattaagtattaa-aagttcaatagtttctttg 331  Q
    |||| |||| |  ||||| |||||||||||||||||||    
T  6531894 gaaatgatttaagattaagaagttcaatagtttctttg 6531857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 8235825 - 8235897
Alignment:
Q  200 aatccgcaagtgtacggttctattg-agtagtacaagaatatcgttccacagagagttattgtaattacagattt 273  Q
    |||||||||||| |||||||||||| ||||||  || |||||||||||| || ||||| |||||||||| |||||    
T  8235825 aatccgcaagtgcacggttctattgaagtagt--aaaaatatcgttccatagggagttgttgtaattactgattt 8235897  T

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Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 193 - 351
Target Start/End: Original strand, 3362920 - 3363075
Alignment:
Q  193 tgatacgaatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattag 292  Q
    ||||||||||||||||||||||||| |||| |||||||| ||  |||| ||| |||||||||||||||||||||| |||||||||||||||  |||||||    
T  3362920 tgatacgaatccgcaagtgtacggtgctatcgagtagtataa--atattgtttcacagagagttattgtaattaccgatttcgttttcaattgtgattag 3363017  T
Q  293 ctgaaaagattaagtattaaaagttcaatagtttctttgtttaaattcagattttataa 351  Q
    |||||||||||||| |||  |  ||||| ||||| || ||||||||||||||| |||||    
T  3363018 ctgaaaagattaagcattcgagtttcaacagttt-ttggtttaaattcagattatataa 3363075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 7840003 - 7839907
Alignment:
Q  249 agagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagatt-aagtattaaaagttcaatagtttctttgtttaaattcagatt 345  Q
    ||||||||||||||||||  |||||||||||||||| ||||||| ||||||| || |||| ||| ||||  ||||||||||||||  ||||| |||||    
T  7840003 agagagttattgtaattatcgatttcgttttcaatgttgattagttgaaaaggttcaagt-ttagaagtcgaatagtttctttgtcaaaatttagatt 7839907  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 15421855 - 15421775
Alignment:
Q  236 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagtt 317  Q
    ||||| ||||||||  |||||||||||||||  |||||  ||||||||  ||||||||||||||| ||| || |||||||||    
T  15421855 aatattgttccacatggagttattgtaattattgattttcttttcaattgtgattagctgaaaagtttaggt-ttaaaagtt 15421775  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 26290055 - 26290193
Alignment:
Q  192 ttgatacgaatccgcaagtgtacggttctattgagtagt--acaagaatatcgttccacagagagttat-tgtaattacagatttcgttttcaatgatga 288  Q
    |||||||||||| |||||||||| ||||||| |||||||  | |||| ||||| |||||| | |||||| ||||| ||  ||||| ||||| |||| | |    
T  26290055 ttgatacgaatcggcaagtgtacagttctatggagtagtaaaaaagattatcg-tccacataaagttatatgtaagtattgattttgtttttaatggtaa 26290153  T
Q  289 ttagctgaaaagattaagtattaaaagttcaatagtttctt 329  Q
    |||||||||||| | |||| ||| ||||  |||||||||||    
T  26290154 ttagctgaaaagttcaagt-ttagaagtcgaatagtttctt 26290193  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 433
Target Start/End: Complemental strand, 6462029 - 6461920
Alignment:
Q  324 tttctttgtttaaattcagattttataaagaagccttaggattgttgttagatcttaacgataaatactaacaattccaagtctatatctctatcttatg 423  Q
    |||||| ||||||||| | ||||||||||| ||||||| |||  | ||||||||| || |||||||||||||| |||||||||||||||||||||||||     
T  6462029 tttcttggtttaaattaaaattttataaaggagccttaagatattggttagatctgaatgataaatactaacagttccaagtctatatctctatcttata 6461930  T
Q  424 ttaaattcat 433  Q
    ||||||||||    
T  6461929 ttaaattcat 6461920  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 6462106 - 6462026
Alignment:
Q  200 aatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttattgtaattacagatttcgttttc 280  Q
    |||| ||||| |||| ||||||| |||||||| || |||||| |||| |||| ||||||||||||||  ||||| ||||||    
T  6462106 aatcagcaagcgtacagttctatcgagtagtaaaataatatcattccccagaaagttattgtaattatcgattttgttttc 6462026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 17576600 - 17576664
Alignment:
Q  236 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaag 300  Q
    |||||||||||||| |||||| |||||||||  |||||  |||| |||  |||||||||||||||    
T  17576600 aatatcgttccacaaagagttgttgtaattattgattttcttttaaattgtgattagctgaaaag 17576664  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 433
Target Start/End: Original strand, 36709123 - 36709314
Alignment:
Q  242 gttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagtttctttgtttaaattca 341  Q
    |||| ||| ||||||||||||||||   ||||||||||||||| | |||| |||||||||||||||||| ||||||||| | ||| || |||||||||||    
T  36709123 gttctacaaagagttattgtaattatcaatttcgttttcaatgttaattatctgaaaagattaagtattcaaagttcaacaattt-ttggtttaaattca 36709221  T
Q  342 gattttataaagaagccttaggattgttgttagatcttaacgataaatact-aacaattccaagtctatatctctatcttatgttaaattcat 433  Q
     ||  |||||| | | ||||||||||| || | ||||||| || ||| ||| |||||||||  |||||| ||  |||  ||||||||||||||    
T  36709222 tataatataaaaaggtcttaggattgtggtcaaatcttaatgacaaaaactaaacaattccttgtctatttccttattctatgttaaattcat 36709314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 345
Target Start/End: Complemental strand, 17465622 - 17465491
Alignment:
Q  212 tacggttctattgagtagtacaa-gaatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtatt 310  Q
    ||||||||||| |||||||| || || |||||||| |||||||||||  |||||||| ||| | ||||||| |||||||||||||||||||||||| |||    
T  17465622 tacggttctatcgagtagtaaaaagattatcgttc-acagagagttaaagtaattaccgatcttgttttcagtgatgattagctgaaaagattaaggatt 17465524  T
Q  311 aaaagttcaatagtttctttgtttaaattcagatt 345  Q
    || | ||||||   ||||| |||||| ||||||||    
T  17465523 aagatttcaat--gttcttagtttaatttcagatt 17465491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 17295074 - 17295178
Alignment:
Q  200 aatccgcaagtgtacggttct-attgagtagtacaagaatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaa 298  Q
    |||||||||| |||||||||| || |||||||| ||  |||| ||||| || |||||||||||| |||| |||||| |||||||| ||||||||||||||    
T  17295074 aatccgcaagcgtacggttcttatcgagtagtaaaa--atattgttcctcaaagagttattgtacttaccgatttctttttcaattatgattagctgaaa 17295171  T
Q  299 agattaa 305  Q
     ||||||    
T  17295172 tgattaa 17295178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 11376848 - 11376948
Alignment:
Q  200 aatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaa 299  Q
    |||||||||| | |||||||||| ||  ||||  | ||||||||||||| | ||||| |||||||||| |||||  |||  ||| |||||||||||||||    
T  11376848 aatccgcaagcgcacggttctatcga--agtagtaaaatatcgttccacggggagttgttgtaattaccgattttctttctaattatgattagctgaaaa 11376945  T
Q  300 gat 302  Q
    |||    
T  11376946 gat 11376948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 29367815 - 29367715
Alignment:
Q  200 aatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaa 299  Q
    |||||||||| |||||||||||| ||  || |  | |||||||||||||| |||||| ||||||||||  ||||  |||  ||| |||||||||||||||    
T  29367815 aatccgcaagcgtacggttctatcga--agcagtaaaatatcgttccacaaagagttgttgtaattaccaattttctttctaattatgattagctgaaaa 29367718  T
Q  300 gat 302  Q
    |||    
T  29367717 gat 29367715  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 345
Target Start/End: Complemental strand, 4237432 - 4237280
Alignment:
Q  192 ttgatacgaatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgatta 291  Q
    |||||||||||  ||||| |||| |||||||  ||||||| ||  |||||||| ||| |||||||||||||||||| |||||||||| ||||| | ||||    
T  4237432 ttgatacgaatttgcaagcgtacagttctatcaagtagtaaaa--atatcgtttcacggagagttattgtaattaccgatttcgtttccaatgttaatta 4237335  T
Q  292 gctgaaaagattaagtattaaaagttcaa-tagtttctttgtttaaattcagatt 345  Q
    | |||||| ||||||||||  ||||||||  | |||||| ||| |||||||||||    
T  4237334 gttgaaaatattaagtattcgaagttcaacaattttcttggttaaaattcagatt 4237280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 19222713 - 19222611
Alignment:
Q  199 gaatccgcaagtgtacggttctattga-gtagtacaagaatatcgttccacagagagttat-tgtaattacagatttcgttttcaatgatgattagctga 296  Q
    |||||||||||||||||| ||||| || ||| || |||| ||||| ||||||  ||||||| ||||||||| |||||| |||||||| ||||||||||||    
T  19222713 gaatccgcaagtgtacggatctatcgaagtaataaaagattatcgatccacatggagttatatgtaattaccgatttccttttcaattatgattagctga 19222614  T
Q  297 aaa 299  Q
    |||    
T  19222613 aaa 19222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 20685748 - 20685648
Alignment:
Q  193 tgatacgaatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttattgtaattacagatttc-gttttcaatgatgatta 291  Q
    |||||||||||||||||  ||  |||||||  ||||||| ||  ||||||||||||||||  |||||||||||||  ||||  |||||||||| ||||||    
T  20685748 tgatacgaatccgcaagcatatagttctatcaagtagtaaaa--atatcgttccacagag--ttattgtaattaccaatttttgttttcaatgttgatta 20685653  T
Q  292 gctga 296  Q
    |||||    
T  20685652 gctga 20685648  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 341
Target Start/End: Original strand, 21515703 - 21515848
Alignment:
Q  195 atacgaatccgcaagtgtacggttct-attgagtagtacaagaat-atcgttccacagagagttattgtaattacagatttcgttttcaatgatgattag 292  Q
    ||||||||||||||| |||||||||| || |||||||| ||  || ||||| ||| |||||||||  |||||||| |||   ||||||||||||||||||    
T  21515703 atacgaatccgcaagcgtacggttcttatcgagtagtaaaaatatcatcgt-ccatagagagttaaagtaattactgatcatgttttcaatgatgattag 21515801  T
Q  293 ctgaaaagattaagtattaaaagttcaatagtttctttgtttaaattca 341  Q
    |||||||||||||| ||||| ||||||||   ||||| |||||||||||    
T  21515802 ctgaaaagattaaggattaagagttcaat--gttcttggtttaaattca 21515848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 21511287 - 21511401
Alignment:
Q  193 tgatacgaatccgcaagtgtacggttct-attgagtagtacaa-gaatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgatt 290  Q
    ||||||||||| ||||| |||||| ||| || |||||||| || || |||||| ||||| |||||||  |||||||| ||| | ||||||||||||| ||    
T  21511287 tgatacgaatctgcaagcgtacgggtcttatcgagtagtaaaaagattatcgt-ccacatagagttaaagtaattaccgatcttgttttcaatgatgctt 21511385  T
Q  291 agctgaaaagattaag 306  Q
    ||||||||||||||||    
T  21511386 agctgaaaagattaag 21511401  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 427
Target Start/End: Complemental strand, 35407088 - 35406946
Alignment:
Q  286 tgattagctgaaaagattaagtattaaaagttcaatagtttctttgttt-aaattcagattttataaagaagccttaggattgttgttagatcttaacga 384  Q
    ||||||||||||||||| |||| ||| ||||||||| |||| || |||| |||||||||| ||||||||| | ||||||||||| ||   ||  ||| ||    
T  35407088 tgattagctgaaaagatcaagt-ttataagttcaatggtttgttggttttaaattcagatattataaagaggtcttaggattgtggtctaattgtaatga 35406990  T
Q  385 taaatact-aacaattccaagtctatatctctatcttatgttaa 427  Q
     ||||||| |||||||||   ||||||||||||| |||||||||    
T  35406989 caaatactaaacaattccctatctatatctctattttatgttaa 35406946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 23483194 - 23483156
Alignment:
Q  193 tgatacgaatccgcaagtgtacggttctattgagtagta 231  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  23483194 tgatacgaattcgcaagtgtacggttctatcgagtagta 23483156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 13265 - 13164
Alignment:
Q  236 aatatcgttccacagagagttattgtaattacagatttcgttttcaatgatgattagctgaaaagattaagtattaaaagttcaatagtttctttgttta 335  Q
    ||||||||||| ||||||||| || | ||||| |||||| || | | | |||||||| ||||| |||||||  | | ||||||||||||||||||| |||    
T  13265 aatatcgttcctcagagagttgttttgattaccgatttctttcttagttatgattagttgaaatgattaaggttcagaagttcaatagtttctttgatta 13166  T
Q  336 aa 337  Q
    ||    
T  13165 aa 13164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 9797777 - 9797852
Alignment:
Q  193 tgatacgaatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttat-tgtaattac 267  Q
    |||||||||| ||||||| ||||||||||| |||||||| |||| ||||  ||||||  ||||||| |||||||||    
T  9797777 tgatacgaattcgcaagtatacggttctatcgagtagtaaaagattatcaatccacatggagttatatgtaattac 9797852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 42698406 - 42698335
Alignment:
Q  195 atacgaatccgcaagtgtacggttctattgagtagtacaagaatatcgttccacagagagttattgtaattac 267  Q
    |||||||||||||||| ||||| ||||| |||||||| |||| ||||  |||| ||||||||  |||||||||    
T  42698406 atacgaatccgcaagtttacggctctatcgagtagta-aagattatcaatccatagagagtttatgtaattac 42698335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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